Repository for the CIML 2024 Summer Institute training materials.
- A full catalog of all our trainings at SDSC can be found here.
- Description
- Agenda
- Instructors
- All presentations are located in this repository.
This repository contains all the presentations and training material used for the CIML Summer Institute. To work with the material, remember to CLONE this repo.
All times are in Pacific time.
| TIME (Pacific time) | TOPIC | PRESENTER |
|---|---|---|
| 9:00 AM - 9:15 AM | 1.1 Welcome & Orientation | Mary Thomas |
| 9:15 AM – 9:45 AM | 1.2 Accounts, Login, Environment, Running Jobs and Logging into Expanse User Portal | Mary Thomas |
| 9:45 AM – 10:30 AM | Q&A, Wrap-up | All |
| TIME (Pacific time) | TOPIC | PRESENTER |
|---|---|---|
| 8:00 AM – 8:30 AM | Light Breakfast & Check-in | |
| 8:30 AM – 9:30 AM | 2.1 Welcome and Introductions | Mary Thomas |
| 9:30 AM - 10:15 AM | 2.2 Parallel Computing Concepts | Robert Sinkovits |
| 10:15 AM - 10:30 AM | Break | |
| 10:30 AM - 11: 15 AM | 2.3 Getting Started with Batch Job Scheduling | Marty Kandes |
| 11:15 AM - 12:30 PM | 2.4 Data Management and File Systems | Marty Kandes |
| 12:30 PM - 1:30 PM | Lunch | |
| 1:30 PM - 3:00 PM | 2.5 GPU Computing - Hardware architecture and software infrastructure | Andreas Goetz |
| 3:00 PM - 3:15 PM | Break | |
| 3:15 PM - 4:45 PM | 2.6 Software Containers for Scientific and High-Performance Computing | Marty Kandes |
| 4:45 PM – 5:30 PM | Q&A, Wrap-up | All |
| 5:30 PM – 7:00 PM | Evening Reception - UC San Diego, Seventh College, 15th Floor |
| TIME (Pacific time) | TOPIC | PRESENTER |
|---|---|---|
| 8:00 AM – 8:30 AM | Light Breakfast & Check-in | |
| 8:30 AM - 8:45 AM | 3.1 Machine Learning (ML) Overview | Mai Nguyen |
| 8:45 AM - 10:15 AM | 3.2 Introduction to Neural Networks and Convolution Neural Networks | Paul Rodriguez |
| 10:15 AM - 10:30 AM | Break | |
| 10:30 AM - 12:00 PM | 3.3 Practical Guidelines for Training Deep Learning on HPC | Paul Rodriguez |
| 12:00 PM - 1:00 PM | Lunch | |
| 1:00 PM - 1:45 PM | 3.4 Deep Learning Layers and Architectures | Mai Nguyen |
| 1:45 PM - 3:15 PM | 3.5 Deep Learning Transfer Learning | Mai Nguyen |
| 3:15 PM - 3:30 PM | Break | |
| 3:30 PM - 5:00 PM | 3.6 Deep Learning – Special Connections | Paul Rodriguez |
| 5:00 PM | Q&A, Wrap-up | All |
| TIME (Pacific time) | TOPIC | PRESENTER |
|---|---|---|
| 8:00 AM – 8:30 AM | Light Breakfast & Check-in | |
| 8:30 AM – 10:00 AM | 4.1 CONDA Environments and Jupyter Notebook on Expanse: Scalable & Reproducible | Peter Rose Ph.D. |
| 10:00 AM – 10:15 AM | Break | |
| 10:15 AM – 10:45 AM | 4.2 R on HPC Demo | Paul Rodriguez |
| 10:45 AM - 12:15 PM | 4.3 Spark | Mai Nguyen |
| 12:15 PM - 1:15 PM | Lunch | |
| 12:30 PM – 1:15 PM | 4.4 LLM Overview | Mai Nguyen |
| 2:15 PM - 2:30 PM | Break | |
| 2:30 PM - 4:30 PM | 4.5 LLM Overview - continued | Paul Rodriguez |
| 4:30 PM – 5:00 PM | Q&A, wrap-up |
| Name | Title | |
|---|---|---|
| Andreas Goetz, Ph.D. | Research Scientist, Principal Investigator | awgoetz at ucsd.edu |
| Mai Nguyen Ph.D. | Lead for Data Analytics | mhnguyen at ucsd.edu |
| Marty Kandes Ph.D. | Computational and Data Science Research Specialist | mkandes at ucsd.edu |
| Mary Thomas Ph.D. | Director of CIML, Computational Data Scientist, HPC Trainer | mpthomas at ucsd.edu |
| Paul Rodriguez Ph.D. | Computational Data Scientist | p4rodriguez at ucsd.edu |
| Peter Rose Ph.D. | Director for Structural Bioinformatics Laboratory | pwrose at ucsd.edu |
| Robert Sinkovits Ph.D. | Director of Education and Training | rssinkovits at ucsd.edu |