- Description
- Agenda
- Instructors
- All presentations are located in this repository.
This repository contains all the presentations and training material used for the CIML Summer Institute. To work with the material, remember to CLONE this repo.
All times are in Pacific time.
| TIME (Pacific time) | TOPIC | PRESENTER |
|---|---|---|
| 9:00 AM - 9:20 AM | 1.1 Welcome & Orientation [Interactive Video] | Mary Thomas |
| 9:20 AM – 9:50 AM | 1.2 Access, Accounts, Login, Environment, Expanse User Portal [Interactive Video] | Mary Thomas |
| 9:50 AM – 10:10 AM | 1.3 Running Jupyter Notebooks on Expanse [Interactive Video] | Marty Kandes |
| 10:10 AM – 10:30 AM | Q&A, Wrap-up | All |
| TIME (Pacific time) | TOPIC | PRESENTER |
|---|---|---|
| 8:00 AM – 8:05 AM | 2.1 Quick Welcome | Mary Thomas |
| 8:05 AM – 9:05 AM | 2.2 Introduction HPC/Cyberinfrastructure [Interactive Video] | Robert Sinkovits |
| 9:05 AM – 10:05 AM | 2.3 CPU Computing - Hardware, Architecture, Software, Running Jobs [Interactive Video] | Mary Thomas |
| 10:05 AM – 11:35 AM | 2.4 Data Management and File Systems [Interactive Video] | Marty Kandes |
| 11:35 AM – 12:05 PM | Break/Lunch | |
| 12:05 PM – 1:50 PM | 2.5 GPU Computing - Hardware architecture and software infrastructure [Interactive Video] | Andreas Goetz |
| 12:05 PM – 1:50 PM | Q&A, Wrap-up | All |
| TIME (Pacific time) | TOPIC | PRESENTER |
|---|---|---|
| 8:00 AM – 8:05 AM | 3.1 Quick Welcome | Mary Thomas |
| 8:05 AM – 9:15 AM | 3.2 Introduction to Singularity: Containers for Scientific and High-Performance Computing [Interactive Video] |
Marty Kandes |
| 9:15 AM – 11:00 AM | 3.3 CONDA Environments and Jupyter Notebook on Expanse: Scalable & Reproducible Data Exploration and ML [Interactive Video] | Peter Rose |
| 11:00 AM – 11:30 AM | Break/ Lunch | |
| 11:30 AM – 11:45 AM | 3.4 Machine Learning (ML) Overview Session was skipped, but resources are still availabe |
Mai Nguyen |
| 11:45 AM – 12:15 PM | 3.5 R on HPC Demo [Interactive Video] | Paul Rodriguez |
| 12:15 PM – 2:15 PM | 3.6 Spark [Interactive Video] | Mai Nguyen |
| TIME (Pacific time) | TOPIC | PRESENTER |
|---|---|---|
| 8:00 AM – 8:05 AM | 4.1 Quick Welcome | Mary Thomas |
| 8:05 AM – 9:05 AM | 4.2 Intro to NN/CNN [Interactive Video] | Paul Rodriguez |
| 9:05 AM – 10:05 AM | 4.3 Deep Learning [Interactive Video] | Paul Rodriguez |
| 10:05 AM – 10:50 AM | 4.4 Deep Learning Layers and Models [Interactive Video] | Mai Nguyen |
| 10:55 AM – 11:25 AM | Break/Lunch | |
| 11:25 AM – 12:25 PM | 4.5 Deep Learning Transfer Learning [Interactive Video] | Mai Nguyen |
| 12:25 PM – 1:25 PM | 4.6 Deep Learning – Other topics [Interactive Video] | Paul Rodriguez |
| 1:25 PM – 2:00 PM | Q&A, wrap-up |
| Name | Title | Contact |
|---|---|---|
| Andreas Goetz, Ph.D. | Research Scientist, Principal Investigator | awgoetz at ucsd.edu |
| Marty Kandes Ph.D. | Computational and Data Science Research Specialist | mkandes at ucsd.edu |
| Mai Nguyen Ph.D. | Lead for Data Analytics | mhnguyen at ucsd.edu |
| Paul Rodriguez Ph.D. | Computational Data Scientist | p4rodriguez at ucsd.edu |
| Peter Rose Ph.D. | Director for Structural Bioinformatics Laboratory | pwrose at ucsd.edu |
| Robert Sinkovits Ph.D. | Director of Education and Training | rssinkovits at ucsd.edu |
| Mary Thomas Ph.D. | Director of CIML, Computational Data Scientist, HPC Trainer | mpthomas at ucsd.edu |