Version 0.3.0

charlesrocabert · Sep 17, 2019 · 53f38a3 · 53f38a3
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diff --git a/MetEvolSim.egg-info/PKG-INFO b/MetEvolSim.egg-info/PKG-INFO
@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: MetEvolSim
-Version: 0.2.3
+Version: 0.3.0
 Summary: MetEvolSim (Metabolome Evolution Simulator) Python Package
 Home-page: https://github.com/charlesrocabert/MetEvolSim
 Author: Charles Rocabert, Gábor Boross, Balázs Papp
@@ -11,7 +11,7 @@ Description: <h1 align="center">MetEvolSim</h1>
         <p align="center">
             Python package dedicated to the evolution of metabolic concentrations
             <br/><br/>
-            <a href="https://github.com/charlesrocabert/MetEvolSim/releases/latest"><img src="https://img.shields.io/badge/PyPI package- 0.2.0-orange.svg" /></a>&nbsp;<a href="https://www.gnu.org/licenses/gpl-3.0"><img src="https://img.shields.io/badge/license-GPL v3-blue.svg" /></a>&nbsp;
+            <a href="https://github.com/charlesrocabert/MetEvolSim/releases/latest"><img src="https://img.shields.io/badge/PyPI package- 0.3.0-orange.svg" /></a>&nbsp;<a href="https://www.gnu.org/licenses/gpl-3.0"><img src="https://img.shields.io/badge/license-GPL v3-blue.svg" /></a>&nbsp;
             <br/>
             <img src="./logos/metevolsim_logo.png" width=150>
         </p>
@@ -105,8 +105,10 @@ Description: <h1 align="center">MetEvolSim</h1>
         ### Evolution experiments:
         Three types of evolution experiments are available:
         - <code>MUTATION_ACCUMULATION</code>: Run a mutation accumulation experiment by accepting all new mutations without any selection threshold,
-        - <code>METABOLIC_SUM_SELECTION</code>: Run an evolution experiment by applying a stabilizing selection on the sum of metabolic abundances,
-        - <code>TARGET_FLUXES_SELECTION</code>: Run an evolution experiment by applying a stabilizing selection on the objective function.
+        - <code>ABSOLUTE_METABOLIC_SUM_SELECTION</code>: Run an evolution experiment by applying a stabilizing selection on the sum of absolute metabolic abundances,
+        - <code>RELATIVE_METABOLIC_SUM_SELECTION</code>: Run an evolution experiment by applying a stabilizing selection on the sum of relative metabolic abundances,
+        - <code>ABSOLUTE_TARGET_FLUXES_SELECTION</code>: Run an evolution experiment by applying a stabilizing selection on the MOMA distance of absolute target fluxes,
+        - <code>RELATIVE_TARGET_FLUXES_SELECTION</code>: Run an evolution experiment by applying a stabilizing selection on the MOMA distance of relative target fluxes.
 
         ```python
         # Load a Markov Chain Monte Carlo (MCMC) instance

diff --git a/README.md b/README.md
@@ -2,7 +2,7 @@
 <p align="center">
     Python package dedicated to the evolution of metabolic concentrations
     <br/><br/>
-    <a href="https://github.com/charlesrocabert/MetEvolSim/releases/latest"><img src="https://img.shields.io/badge/PyPI package- 0.2.0-orange.svg" /></a>&nbsp;<a href="https://www.gnu.org/licenses/gpl-3.0"><img src="https://img.shields.io/badge/license-GPL v3-blue.svg" /></a>&nbsp;
+    <a href="https://github.com/charlesrocabert/MetEvolSim/releases/latest"><img src="https://img.shields.io/badge/PyPI package- 0.3.0-orange.svg" /></a>&nbsp;<a href="https://www.gnu.org/licenses/gpl-3.0"><img src="https://img.shields.io/badge/license-GPL v3-blue.svg" /></a>&nbsp;
     <br/>
     <img src="./logos/metevolsim_logo.png" width=150>
 </p>
@@ -96,8 +96,10 @@ All numerical analyses output files are saved in a subfolder <code>output</code>
 ### Evolution experiments:
 Three types of evolution experiments are available:
 - <code>MUTATION_ACCUMULATION</code>: Run a mutation accumulation experiment by accepting all new mutations without any selection threshold,
-- <code>METABOLIC_SUM_SELECTION</code>: Run an evolution experiment by applying a stabilizing selection on the sum of metabolic abundances,
-- <code>TARGET_FLUXES_SELECTION</code>: Run an evolution experiment by applying a stabilizing selection on the objective function.
+- <code>ABSOLUTE_METABOLIC_SUM_SELECTION</code>: Run an evolution experiment by applying a stabilizing selection on the sum of absolute metabolic abundances,
+- <code>RELATIVE_METABOLIC_SUM_SELECTION</code>: Run an evolution experiment by applying a stabilizing selection on the sum of relative metabolic abundances,
+- <code>ABSOLUTE_TARGET_FLUXES_SELECTION</code>: Run an evolution experiment by applying a stabilizing selection on the MOMA distance of absolute target fluxes,
+- <code>RELATIVE_TARGET_FLUXES_SELECTION</code>: Run an evolution experiment by applying a stabilizing selection on the MOMA distance of relative target fluxes.
 
 ```python
 # Load a Markov Chain Monte Carlo (MCMC) instance