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fix: update markdown images #3390

fix: update markdown images

fix: update markdown images #3390

Workflow file for this run

name: Push Tests
on:
push:
branches: main
pull_request:
branches: "*"
env:
JEST_ENV: prod
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
jobs:
lint:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- run: |
git fetch --depth=1 origin +${{github.base_ref}}
- name: Set up Python 3.12
uses: actions/setup-python@v5
with:
python-version: 3.12
- name: Node cache
uses: actions/cache@v4
with:
path: ~/.npm
key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }}
restore-keys: |
${{ runner.os }}-node-
- name: Install dependencies
run: |
pip install flake8
pip install black
cd client
npm install
- name: Format with black and lint with flake8
run: |
make lint-server
- name: Lint src with eslint
working-directory: ./client
run: |
npx eslint src __tests__
unit-test:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up Python 3.12 (pyenv) # pyenv needed for mlflow in cli annotate tests
uses: gabrielfalcao/pyenv-action@v9
with:
default: 3.12
command: pip install -U pip # upgrade pip after installing python
- run: pip install virtualenv # virtualenv needed for mlflow in cli annotate tests
- name: Python cache
uses: actions/cache@v4
with:
path: ~/.cache/pip
key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements*.txt') }}
restore-keys: |
${{ runner.os }}-pip-
- name: Node cache
uses: actions/cache@v4
with:
path: ~/.npm
key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }}
restore-keys: |
${{ runner.os }}-node-
- name: Install dependencies
run: make pydist install-dist dev-env-server
- name: Unit tests
run: |
make unit-test-server unit-test-client
bash <(curl -s https://codecov.io/bash) -y .codecov.yml -k server -cF server,python,unitTest
cd client && ./node_modules/codecov/bin/codecov --yml=../.codecov.yml --root=../ --gcov-root=../ -C -F frontend,javascript,unitTest
smoke-tests:
runs-on: macos-latest
timeout-minutes: 20
steps:
- uses: actions/checkout@v4
- name: Set up Python 3.12
uses: actions/setup-python@v5
with:
python-version: 3.12
- name: Python cache
uses: actions/cache@v4
with:
path: ~/.cache/pip
key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements*.txt') }}
restore-keys: |
${{ runner.os }}-pip-
- name: Node cache
uses: actions/cache@v4
with:
path: ~/.npm
key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }}
restore-keys: |
${{ runner.os }}-node-
- name: Install dependencies
run: |
pip install setuptools
make pydist install-dist
- name: Smoke tests (without annotations feature)
run: |
cd client && make smoke-test
./node_modules/codecov/bin/codecov --yml=../.codecov.yml --root=../ --gcov-root=../ -C -F frontend,javascript,smokeTest
# TODO: reinstate: https://github.com/chanzuckerberg/cellxgene/issues/2544
# smoke-tests-annotations:
# runs-on: ubuntu-latest
# timeout-minutes: 20
# steps:
# - uses: actions/checkout@v2
# - name: Set up Python 3.9
# uses: actions/setup-python@v4
# with:
# python-version: 3.9
# - name: Python cache
# uses: actions/cache@v1
# with:
# path: ~/.cache/pip
# key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements*.txt') }}
# restore-keys: |
# ${{ runner.os }}-pip-
# - name: Node cache
# uses: actions/cache@v1
# with:
# path: ~/.npm
# key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }}
# restore-keys: |
# ${{ runner.os }}-node-
# - name: Install dependencies
# run: make pydist install-dist
# - name: Smoke tests (with annotations feature)
# run: |
# cd client && make smoke-test-annotations
# ./node_modules/codecov/bin/codecov --yml=../.codecov.yml --root=../ --gcov-root=../ -C -F frontend,javascript,smokeTestAnnotations