fix: update markdown images #3390
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name: Push Tests | |
on: | |
push: | |
branches: main | |
pull_request: | |
branches: "*" | |
env: | |
JEST_ENV: prod | |
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
jobs: | |
lint: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- run: | | |
git fetch --depth=1 origin +${{github.base_ref}} | |
- name: Set up Python 3.12 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: 3.12 | |
- name: Node cache | |
uses: actions/cache@v4 | |
with: | |
path: ~/.npm | |
key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }} | |
restore-keys: | | |
${{ runner.os }}-node- | |
- name: Install dependencies | |
run: | | |
pip install flake8 | |
pip install black | |
cd client | |
npm install | |
- name: Format with black and lint with flake8 | |
run: | | |
make lint-server | |
- name: Lint src with eslint | |
working-directory: ./client | |
run: | | |
npx eslint src __tests__ | |
unit-test: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python 3.12 (pyenv) # pyenv needed for mlflow in cli annotate tests | |
uses: gabrielfalcao/pyenv-action@v9 | |
with: | |
default: 3.12 | |
command: pip install -U pip # upgrade pip after installing python | |
- run: pip install virtualenv # virtualenv needed for mlflow in cli annotate tests | |
- name: Python cache | |
uses: actions/cache@v4 | |
with: | |
path: ~/.cache/pip | |
key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements*.txt') }} | |
restore-keys: | | |
${{ runner.os }}-pip- | |
- name: Node cache | |
uses: actions/cache@v4 | |
with: | |
path: ~/.npm | |
key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }} | |
restore-keys: | | |
${{ runner.os }}-node- | |
- name: Install dependencies | |
run: make pydist install-dist dev-env-server | |
- name: Unit tests | |
run: | | |
make unit-test-server unit-test-client | |
bash <(curl -s https://codecov.io/bash) -y .codecov.yml -k server -cF server,python,unitTest | |
cd client && ./node_modules/codecov/bin/codecov --yml=../.codecov.yml --root=../ --gcov-root=../ -C -F frontend,javascript,unitTest | |
smoke-tests: | |
runs-on: macos-latest | |
timeout-minutes: 20 | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python 3.12 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: 3.12 | |
- name: Python cache | |
uses: actions/cache@v4 | |
with: | |
path: ~/.cache/pip | |
key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements*.txt') }} | |
restore-keys: | | |
${{ runner.os }}-pip- | |
- name: Node cache | |
uses: actions/cache@v4 | |
with: | |
path: ~/.npm | |
key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }} | |
restore-keys: | | |
${{ runner.os }}-node- | |
- name: Install dependencies | |
run: | | |
pip install setuptools | |
make pydist install-dist | |
- name: Smoke tests (without annotations feature) | |
run: | | |
cd client && make smoke-test | |
./node_modules/codecov/bin/codecov --yml=../.codecov.yml --root=../ --gcov-root=../ -C -F frontend,javascript,smokeTest | |
# TODO: reinstate: https://github.com/chanzuckerberg/cellxgene/issues/2544 | |
# smoke-tests-annotations: | |
# runs-on: ubuntu-latest | |
# timeout-minutes: 20 | |
# steps: | |
# - uses: actions/checkout@v2 | |
# - name: Set up Python 3.9 | |
# uses: actions/setup-python@v4 | |
# with: | |
# python-version: 3.9 | |
# - name: Python cache | |
# uses: actions/cache@v1 | |
# with: | |
# path: ~/.cache/pip | |
# key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements*.txt') }} | |
# restore-keys: | | |
# ${{ runner.os }}-pip- | |
# - name: Node cache | |
# uses: actions/cache@v1 | |
# with: | |
# path: ~/.npm | |
# key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }} | |
# restore-keys: | | |
# ${{ runner.os }}-node- | |
# - name: Install dependencies | |
# run: make pydist install-dist | |
# - name: Smoke tests (with annotations feature) | |
# run: | | |
# cd client && make smoke-test-annotations | |
# ./node_modules/codecov/bin/codecov --yml=../.codecov.yml --root=../ --gcov-root=../ -C -F frontend,javascript,smokeTestAnnotations |