fix json and add hack to get around root ontology term

chanzuckerberg · Oct 22, 2024 · 3504159 · 3504159
1 parent 13142b4
commit 3504159
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/ontology-assets/ontology_info.json b/ontology-assets/ontology_info.json
@@ -1,5 +1,5 @@
 {
-  "5.2.1+experimental": {
+  "5.2.1-experimental": {
     "ontologies": {
       "CL": {
         "version": "v2024-08-16",

diff --git a/tools/ontology-builder/src/all_ontology_generator.py b/tools/ontology-builder/src/all_ontology_generator.py
@@ -175,7 +175,8 @@ def _extract_ontology_term_metadata(onto: owlready2.entity.ThingClass, allowed_o
         term_id = onto_term.name.replace("_", ":")
 
         # Skip terms that are not direct children from this ontology
-        if term_id.split(":")[0] not in allowed_ontologies:
+        term_id_parts = term_id.split(":")
+        if len(term_id_parts) > 2 or term_id_parts[0] not in allowed_ontologies:
             continue
         # Gets ancestors
         ancestors = _get_ancestors(onto_term, allowed_ontologies)