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feat: adding proof-of-concept works #15

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merged 18 commits into from
Oct 31, 2024
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This PR adds David Gicevs Proof-of-Concepts works to import nuclotide short-read-sequencing data into the SILO database.

@gordonkoehn gordonkoehn self-assigned this Oct 31, 2024
@gordonkoehn gordonkoehn changed the title Adding POC Works feat: adding proof-of-concept works Oct 31, 2024
dependabot bot and others added 16 commits October 31, 2024 12:37
Bumps [saadmk11/github-actions-version-updater](https://github.com/saadmk11/github-actions-version-updater) from 0.7.4 to 0.8.1.
- [Release notes](https://github.com/saadmk11/github-actions-version-updater/releases)
- [Changelog](https://github.com/saadmk11/github-actions-version-updater/blob/main/CHANGELOG.md)
- [Commits](saadmk11/github-actions-version-updater@v0.7.4...v0.8.1)

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updated-dependencies:
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  dependency-type: direct:production
  update-type: version-update:semver-minor
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Signed-off-by: dependabot[bot] <[email protected]>
Bumps [amannn/action-semantic-pull-request](https://github.com/amannn/action-semantic-pull-request) from 5.2.0 to 5.5.3.
- [Release notes](https://github.com/amannn/action-semantic-pull-request/releases)
- [Changelog](https://github.com/amannn/action-semantic-pull-request/blob/main/CHANGELOG.md)
- [Commits](amannn/action-semantic-pull-request@v5.2.0...v5.5.3)

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updated-dependencies:
- dependency-name: amannn/action-semantic-pull-request
  dependency-type: direct:production
  update-type: version-update:semver-minor
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Signed-off-by: dependabot[bot] <[email protected]>
Bumps [microsoft/action-python](https://github.com/microsoft/action-python) from 0.6.4 to 0.7.3.
- [Release notes](https://github.com/microsoft/action-python/releases)
- [Commits](microsoft/action-python@0.6.4...0.7.3)

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updated-dependencies:
- dependency-name: microsoft/action-python
  dependency-type: direct:production
  update-type: version-update:semver-minor
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Signed-off-by: dependabot[bot] <[email protected]>
Bumps [actions/checkout](https://github.com/actions/checkout) from 3.5.2 to 4.2.2.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](actions/checkout@v3.5.2...v4.2.2)

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updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-major
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Signed-off-by: dependabot[bot] <[email protected]>
Bumps [pytest-cov](https://github.com/pytest-dev/pytest-cov) from 4.0.0 to 6.0.0.
- [Changelog](https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst)
- [Commits](pytest-dev/pytest-cov@v4.0.0...v6.0.0)

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updated-dependencies:
- dependency-name: pytest-cov
  dependency-type: direct:production
  update-type: version-update:semver-major
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Signed-off-by: dependabot[bot] <[email protected]>
Bumps [black](https://github.com/psf/black) from 23.3.0 to 24.10.0.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](psf/black@23.3.0...24.10.0)

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updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-major
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Signed-off-by: dependabot[bot] <[email protected]>
Bumps [check-manifest](https://github.com/mgedmin/check-manifest) from 0.49 to 0.50.
- [Changelog](https://github.com/mgedmin/check-manifest/blob/master/CHANGES.rst)
- [Commits](mgedmin/check-manifest@0.49...0.50)

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updated-dependencies:
- dependency-name: check-manifest
  dependency-type: direct:production
  update-type: version-update:semver-minor
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Signed-off-by: dependabot[bot] <[email protected]>
Bumps [bandit[toml]](https://github.com/PyCQA/bandit) from 1.7.5 to 1.7.10.
- [Release notes](https://github.com/PyCQA/bandit/releases)
- [Commits](PyCQA/bandit@1.7.5...1.7.10)

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updated-dependencies:
- dependency-name: bandit[toml]
  dependency-type: direct:production
  update-type: version-update:semver-patch
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Signed-off-by: dependabot[bot] <[email protected]>
Bumps [pre-commit](https://github.com/pre-commit/pre-commit) from 3.3.1 to 4.0.1.
- [Release notes](https://github.com/pre-commit/pre-commit/releases)
- [Changelog](https://github.com/pre-commit/pre-commit/blob/main/CHANGELOG.md)
- [Commits](pre-commit/pre-commit@v3.3.1...v4.0.1)

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updated-dependencies:
- dependency-name: pre-commit
  dependency-type: direct:production
  update-type: version-update:semver-major
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Signed-off-by: dependabot[bot] <[email protected]>
Bumps [pytest](https://github.com/pytest-dev/pytest) from 7.3.1 to 8.3.3.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@7.3.1...8.3.3)

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updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-major
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Signed-off-by: dependabot[bot] <[email protected]>
Updates the requirements on [pytest-mock](https://github.com/pytest-dev/pytest-mock) to permit the latest version.
- [Release notes](https://github.com/pytest-dev/pytest-mock/releases)
- [Changelog](https://github.com/pytest-dev/pytest-mock/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest-mock@v0.1.0...v3.14.0)

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updated-dependencies:
- dependency-name: pytest-mock
  dependency-type: direct:production
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Signed-off-by: dependabot[bot] <[email protected]>
Bumps [shellcheck-py](https://github.com/ryanrhee/shellcheck-py) from 0.9.0.2 to 0.10.0.1.
- [Commits](shellcheck-py/shellcheck-py@v0.9.0.2...v0.10.0.1)

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updated-dependencies:
- dependency-name: shellcheck-py
  dependency-type: direct:production
  update-type: version-update:semver-minor
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Signed-off-by: dependabot[bot] <[email protected]>
Bumps [pylint](https://github.com/pylint-dev/pylint) from 2.17.4 to 3.3.1.
- [Release notes](https://github.com/pylint-dev/pylint/releases)
- [Commits](pylint-dev/pylint@v2.17.4...v3.3.1)

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updated-dependencies:
- dependency-name: pylint
  dependency-type: direct:production
  update-type: version-update:semver-major
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Signed-off-by: dependabot[bot] <[email protected]>
Bumps [flake8-bugbear](https://github.com/PyCQA/flake8-bugbear) from 23.5.9 to 24.8.19.
- [Release notes](https://github.com/PyCQA/flake8-bugbear/releases)
- [Commits](PyCQA/flake8-bugbear@23.5.9...24.8.19)

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updated-dependencies:
- dependency-name: flake8-bugbear
  dependency-type: direct:production
  update-type: version-update:semver-major
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Signed-off-by: dependabot[bot] <[email protected]>
@gordonkoehn gordonkoehn merged commit 20980fc into main Oct 31, 2024
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@gordonkoehn gordonkoehn deleted the feature/initial_works_dgicev branch November 21, 2024 13:36
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