fix docker secrets

cbg-ethz · Dec 20, 2024 · 39ba6d0 · 39ba6d0
1 parent 1129117
commit 39ba6d0
Showing 1 changed file with 10 additions and 4 deletions.
diff --git a/.github/workflows/docker-build-test.yml b/.github/workflows/docker-build-test.yml
@@ -83,12 +83,18 @@ jobs:
           echo SAMPLE_ID=${{ secrets.SAMPLE_ID }} >> .env
           echo BATCH_ID=${{ secrets.BATCH_ID }} >> .env
           echo TIMELINE_FILE=${{ secrets.TIMELINE_FILE }} >> .env
-          echo PRIMER_FILE=${{ secrets.PRMER_FILE }} >> .env
+          echo PRIMER_FILE=${{ secrets.PRIMER_FILE }} >> .env
           echo NEXTCLADE_REFERENCE=${{ secrets.NEXTCLADE_REFERENCE }} >> .env
           echo RESULTS_DIR=${{ secrets.RESULTS_DIR }} >> .env
-          echo AWS_ACCESS_KEY_ID=${{ secrets.AWS_ACCESS_KEY_ID }} >> .env
-          echo AWS_SECRET_ACCESS_KEY=${{ secrets.AWS_SECRET_ACCESS_KEY }} >> .env
-          echo AWS_DEFAULT_REGION=${{ secrets.AWS_DEFAULT_REGION }} >> .env
+
+
+      - name: Create Docker secrets files
+        run: |
+          mkdir -p ./secrets
+          echo "${{ secrets.AWS_ACCESS_KEY_ID }}" > ./secrets/aws_access_key_id.txt
+          echo "${{ secrets.AWS_SECRET_ACCESS_KEY }}" > ./secrets/aws_secret_access_key.txt
+          echo "${{ secrets.AWS_DEFAULT_REGION }}" > ./secrets/aws_default_region.txt
+
 
       - name: Run Docker Compose
         run: docker-compose --env-file .env up -d