fix the pathlib import

cbg-ethz · Nov 28, 2024 · 2cd7636 · 2cd7636
1 parent bc535b9
commit 2cd7636
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/viloca/b2w.py b/viloca/b2w.py
@@ -608,7 +608,7 @@ def build_windows(alignment_file: str, tiling_strategy: TilingStrategy,
                 )
             all_processes.append(p)
         else:
-            logging.info(f'[file already exits] Use window files generated on {time.ctime(pathlib.Path(f"coverage_{idx}.txt").stat().st_mtime)}')
+            logging.info(f'[file already exits] Use window files generated on {time.ctime(Path(f"coverage_{idx}.txt").stat().st_mtime)}')
 
     for p in all_processes:
       p.start()

diff --git a/viloca/shotgun.py b/viloca/shotgun.py
@@ -314,7 +314,7 @@ def win_to_run(alpha_w, seed, inference_type, n_max_haplotypes, n_mfa_starts, un
         if not (reuse_files and os.path.isfile(output_name)):
             rn_list.append((winFile, j, alpha_w, seed, inference_type, n_max_haplotypes, n_mfa_starts, unique_modus, inference_convergence_threshold, record_history))
         else:
-            logging.info(f'[file already exits] Use {output_name} generated on {time.ctime(pathlib.Path(output_name).stat().st_mtime)}')
+            logging.info(f'[file already exits] Use {output_name} generated on {time.ctime(Path(output_name).stat().st_mtime)}')
 
 
     del end
@@ -489,7 +489,7 @@ def main(args):
             logging.debug(e)
             sys.exit('b2w run not successful')
     else:
-        logging.info(f'[file already exits] Use coverage.txt generated on {time.ctime(pathlib.Path("coverage.txt").stat().st_mtime)}')
+        logging.info(f'[file already exits] Use coverage.txt generated on {time.ctime(Path("coverage.txt").stat().st_mtime)}')
 
     aligned_reads = parse_aligned_reads('reads.fas')
     if len(aligned_reads) == 0: