Skip to content

Issues: cbg-ethz/V-pipe

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

31 Open 28 Closed
31 Open 28 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Default deconvolution config is missing help wanted
#161 opened Sep 13, 2024 by GeertvanGeest
Workflow error from V-pipe dry run help wanted
#160 opened Sep 9, 2024 by robertsap
@DrYak
3
Setting VILOCA --windowsize parameter using v-pipe config file not possible help wanted
#157 opened Jul 18, 2024 by anikajohn
Problem in the deconvolution step
#148 opened Jan 8, 2024 by Xuyen21
@DrYak
4
Activating snv in sars tutorial leads to error
#146 opened Jun 13, 2023 by schlaepferp
@DrYak
2
Missing input files for rule generate_web_visualization
#139 opened Mar 8, 2023 by carlottaolivero
Error in rule hmm_align: HIV in Vpipe
#138 opened Feb 2, 2023 by vfdiamante
2
hiv-tutorial fails with haplotype_reconstruction: savage, and SAVAGE command output is dumped into terminal instead of log
#137 opened Nov 18, 2022 by Masterxilo
hiv-tutorial works with haploclique, but fails with predicthaplo
#136 opened Nov 18, 2022 by Masterxilo
[UX issue] multiple GFF
#134 opened Nov 4, 2022 by DrYak
1
[UX issue] unknown keywords in config file
#133 opened Nov 4, 2022 by DrYak
1
Warning: All reads at position 4045 in the same reverse orientation ?
#126 opened Mar 16, 2022 by Vinoy-UKHSA
@spaceben @LaraFuhrmann
1
SARS-CoV-2 workflow comparison - kindly check if your work is represented correctly
#124 opened Mar 7, 2022 by thomasbtf
@kpj @DrYak
1
please document haploclique.extra_parameters
#122 opened Feb 4, 2022 by Masterxilo
3
Getting snake error
#120 opened Jan 22, 2022 by dstcr
23
Running with tutorial dataset giving all empty file
#119 opened Jan 21, 2022 by wasimbt
6
The order of jobs does not reflect the order of execution. Any help?
#107 opened Oct 5, 2021 by carlottaolivero
1
Haplotype percentage or frequency estimation
#101 opened Aug 12, 2021 by poursalavati
Warning: cannot detect conda environment
#100 opened Jun 18, 2021 by med-ss20
@DrYak
4
shorah output in vcf for all samples
#96 opened May 14, 2021 by ibseq
@DrYak
2
error for assigning config file by snakemake option
#89 opened Mar 31, 2021 by vicfabienne
@DrYak
3
posterior values using lofreq rule?
#88 opened Mar 31, 2021 by vicfabienne
2
shorah sampling status
#87 opened Mar 15, 2021 by snaketron
1
threading question
#85 opened Mar 5, 2021 by rsettlage
@kpj @DrYak
7
Primers trimming enhancement
#82 opened Feb 17, 2021 by chadisaad
@DrYak @LaraFuhrmann
1
ProTip! Adding no:label will show everything without a label.