that batch

cbg-ethz · Sep 12, 2024 · 8f821b8 · 8f821b8
1 parent 85e71e0
commit 8f821b8
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflows/amplicon_cov.smk b/workflows/amplicon_cov.smk
@@ -65,7 +65,7 @@ rule get_samples_per_batch:
         samples_batch = "/cluster/project/pangolin/work-amplicon-coverage/test_data/samples{batch}.tsv"
     shell:
         """
-        grep {params.batch} {input.samples_list} > {output.samples_batch}
+        grep {batch} {input.samples_list} > {output.samples_batch}
         """
 
 rule get_coverage_for_batch: