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fix formating
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gordonkoehn committed Sep 24, 2024
1 parent 66e05e5 commit 64f20b1
Showing 1 changed file with 16 additions and 16 deletions.
32 changes: 16 additions & 16 deletions .github/workflows/test-snake.yml
Original file line number Diff line number Diff line change
Expand Up @@ -47,19 +47,19 @@ jobs:
# poetry run snakemake --lint -s workflow/Snakefile

- name: Snakemake Testing
uses: snakemake/snakemake-github-action@v1
with:
directory: '.test'
snakefile: 'workflow/Snakefile'
args: '--cores 1 --use-conda --conda-cleanup-pkgs cache'
stagein: |
source $GITHUB_WORKSPACE/.venv/bin/activate
export PYTHONPATH="${PYTHONPATH}:$GITHUB_WORKSPACE:$GITHUB_WORKSPACE/src"
echo $PYTHONPATH
which python
python --version
pip list
python -c "import sys; print(sys.path)"
python -c "import usefulgnom; print(usefulgnom.__file__)"
python -c "import snakemake; print(snakemake.__file__)"
show-disk-usage-on-error: true
uses: snakemake/snakemake-github-action@v1
with:
directory: '.test'
snakefile: 'workflow/Snakefile'
args: '--cores 1 --use-conda --conda-cleanup-pkgs cache'
stagein: |
source $GITHUB_WORKSPACE/.venv/bin/activate
export PYTHONPATH="${PYTHONPATH}:$GITHUB_WORKSPACE:$GITHUB_WORKSPACE/src"
echo $PYTHONPATH
which python
python --version
pip list
python -c "import sys; print(sys.path)"
python -c "import usefulgnom; print(usefulgnom.__file__)"
python -c "import snakemake; print(snakemake.__file__)"
show-disk-usage-on-error: true

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