remove some outputs

cbg-ethz · Sep 13, 2024 · 413fe25 · 413fe25
1 parent 68c0c76
commit 413fe25
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Showing 2 changed files with 4 additions and 1 deletion.
diff --git a/scripts/amplicon_covs_click.py b/scripts/amplicon_covs_click.py
@@ -329,6 +329,8 @@ def main(
             click.echo("Outputting plots.")
         make_cov_heatmap(all_covs, os.path.join(outdir, "cov_heatmap.pdf"))
 
+        print("Making median cov hist")
+
         make_median_cov_hist(all_covs, os.path.join(outdir, "median_cov_hist.pdf"))
         make_median_coverage_barplot(
             all_covs, os.path.join(outdir, "median_coverage_barplot.pdf")

diff --git a/workflows/amplicon_cov.smk b/workflows/amplicon_cov.smk
@@ -59,7 +59,8 @@ rule relative_amplicon_coverage_per_batch:
             -f {input.samples} \
             -r {params.primers_fp} \
             -o {params.output_dir} \
-            -p 
+            -p \
+            -v 
         """
-Original file line number
+Diff line change
@@ Expand Up / @@ -59,7 +59,8 @@ rule relative_amplicon_coverage_per_batch: @@
                 -f {input.samples} \
                 -r {params.primers_fp} \
                 -o {params.output_dir} \
-                -p
+                -p \
+                -v
             """
@@ Expand Down @@