Integrating Relative Amplicon Coverage #105
Workflow file for this run
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# This pipeline checks whether the package | |
# installs properly, passes unit tests and whether | |
# the code formatting is right. | |
name: build | |
on: | |
push: | |
branches: [ main ] | |
pull_request: | |
branches: [ main ] | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: true | |
matrix: | |
python-version: ["3.11.2"] | |
poetry-version: ["1.8.3"] | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Run black formatting check | |
uses: psf/black@stable | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
cache: "pip" | |
- name: Install Poetry | |
uses: snok/install-poetry@v1 | |
with: | |
virtualenvs-create: true | |
virtualenvs-in-project: true | |
version: ${{ matrix.poetry-version }} | |
- name: Cache dependencies | |
id: cache-deps | |
uses: actions/cache@v2 | |
with: | |
path: .venv | |
key: pydeps-${{ hashFiles('**/poetry.lock') }} | |
- name: Install the dependencies | |
run: poetry install --no-interaction --no-root --with dev | |
if: steps.cache-deps.outputs.cache-hit != 'true' | |
- name: Install the module | |
run: poetry install --with dev --no-interaction | |
- name: Run unit tests | |
run: poetry run pytest | |
- name: Run Ruff | |
run: poetry run ruff check . | |
- name: Run interrogate | |
run: poetry run interrogate src | |
- name: Run Pyright (type checking) | |
run: poetry run pyright |