Compress LFS objects

- Tallymut Zstd compressed to save on Github LFS bandwidth
cbg-ethz · Jun 2, 2023 · 0dae2c1 · 0dae2c1
1 parent 3e57e5e
commit 0dae2c1
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Showing 5 changed files with 6 additions and 6 deletions.
diff --git a/.gitattributes b/.gitattributes
@@ -1,2 +1,2 @@
 .git_archival.json  export-subst
-tallymut_line_full.tsv filter=lfs diff=lfs merge=lfs -text
+tallymut_line_full.tsv.zst filter=lfs diff=lfs merge=lfs -text
diff --git a/preprint/WwSmoothingKernel.ipynb b/preprint/WwSmoothingKernel.ipynb
@@ -90,7 +90,7 @@
    "source": [
     "# Overwrite globals set by WwDec.main:\n",
     "# temporary, globals\n",
-    "tally_data = \"./data/tallymut_line_full.tsv\"\n",
+    "tally_data = \"./data/tallymut_line_full.tsv.zst\"\n",
     "out_dir = (\n",
     "    \"./out\"\n",
     ")\n",

diff --git a/preprint/data/tallymut_line_full.tsv b/preprint/data/tallymut_line_full.tsv
diff --git a/preprint/data/tallymut_line_full.tsv.zst b/preprint/data/tallymut_line_full.tsv.zst
diff --git a/tests/test_integration.py b/tests/test_integration.py
@@ -19,6 +19,6 @@ def test_workflow():
             "--deconv-config=presets/deconv_linear.yaml",
             "--location=Zürich (ZH)",
             "--seed=42",
-            "preprint/data/tallymut_line_full.tsv",
+            "preprint/data/tallymut_line_full.tsv.zst",
         ]
     )