add readme and alpha no error test

README.md

@@ -0,0 +1,27 @@
+# q2-boots
+
+This is a QIIME 2 plugin. For details on QIIME 2, see https://qiime2.org.
+
+## Installation
+
+Ensure QIIME2 is installed by running 
+
+```
+qiime --version
+```
+
+If there is an error, visit the qiime2 information link above for instructions on installation.
+If there is no error thrown here, ensure qiime diversity is installed with:
+
+```
+qiime diversity --version
+```
+In the case of an error, q2-diversity can be installed from https://github.com/qiime2/q2-diversity.
+
+If no error is thrown, proceed to installing q2-boots with the following commands:
+
+```
+git clone https://github.com/qiime2/q2-boots.git
+cd q2-boots
+make install
+```

q2_boots/tests/test_alpha.py

@@ -123,7 +123,24 @@ def test_phylo_metric_no_phylo(self):
                        n=10)
 
     def test_non_phylo_metric_with_phylo(self):
-        pass
+        with StringIO('(O1:0.3, O2:0.2, O3:0.1, O4:0.2)root;') as f:
+            phylogeny = skbio.read(f, format='newick', into=skbio.TreeNode)
+
+        phylogeny = Artifact.import_data(
+            'Phylogeny[Rooted]',
+            phylogeny
+        )
+        t = Table(np.array([[0, 1, 3], [1, 1, 2], [1, 3, 2]]),
+                  ['01', '02', '03'],
+                  ['S1', 'S2', 'S3'])
+        t = Artifact.import_data('FeatureTable[Frequency]', t)
+        # assert no error is thrown, and that phylogeny is just thrown out
+        self.alpha(table=t, sampling_depth=1,
+                   metric='shannon',
+                   random_seed=12,
+                   n=10,
+                   phylogeny=phylogeny)
+        self.assertTrue(True)
 
 
 class TestAlphaBootstrapRepresentative(TestPluginBase):