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[Mutations tab] add gene column to downloaded file from mutations table #10932

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jjgao opened this issue Aug 8, 2024 · 5 comments · May be fixed by cBioPortal/cbioportal-frontend#5049
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[Mutations tab] add gene column to downloaded file from mutations table #10932

jjgao opened this issue Aug 8, 2024 · 5 comments · May be fixed by cBioPortal/cbioportal-frontend#5049
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good first issue results.mutations

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@jjgao
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jjgao commented Aug 8, 2024

Currently gene name is not in the table. After downloading data for multiple genes, you would have to figure out which file is for which gene. There are two options - either would work:

  1. add a gene column into the downloaded file
  2. name the file with gene

Option 1 would be preferable (e.g. users may want to combine data together) if it won't add too much technical complexity.
@charanbhatia
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@jjgao @heuermh can you assign this issue to me?

@chandanSahoo-cs
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can you assign this issue to me

@singhsayan
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Hi @jjgao,

I’m interested in taking on this issue to add a gene column to the downloaded mutation files. My approach would involve using Node.js and Express for handling the server-side functionality and leveraging the fs module for file manipulation.

I believe this will enhance data usability for users. If this aligns with the project’s direction, please assign the issue to me. Looking forward to your feedback!

Best,
Sayan

@dakshika-chaudhary
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I am interested please assign this issue to me

@arishta-dev arishta-dev linked a pull request Nov 23, 2024 that will close this issue
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@arishta-dev
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Hi @jjgao,
I am a new contributor here.
I have put a PR for the approach 1 (adding a new Gene column). I have added necessary details and screenshot of before/after change.
cBioPortal/cbioportal-frontend#5049
Please do let me know if anything else is required from my end. Thanks!

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#10932 Add gene column in the Mutations table arishta-dev/cbioportal-frontend
6 participants
@jjgao @charanbhatia @chandanSahoo-cs @dakshika-chaudhary @singhsayan @arishta-dev