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2 changes: 1 addition & 1 deletion README.md
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> :warning: **py4DSTEM version 0.14 update** :warning: Warning: this is a major update and we expect some workflows to break. You can still install previous versions of py4DSTEM [as discussed here](#legacyinstall)

> :warning: **Phase retrieval refactor version 0.14.9** :warning: Warning: The phase-retrieval modules in py4DSTEM (DPC, parallax, and ptychography) underwent a major refactor in version 0.14.9 and as such older tutorial notebooks will not work as expected. Notably, class names have been pruned to remove the trailing "Reconstruction" (`DPCReconstruction` -> `DPC` etc.), and regularization functions have dropped the `_iter` suffix (and are instead specified as boolean flags). We are working on updating the tutorial notebooks to reflect these changes. In the meantime, there's some more information in the relevant pull request [here](https://github.com/py4dstem/py4DSTEM/pull/597#issuecomment-1890325568).
![py4DSTEM logo](/images/py4DSTEM_logo.png)

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63 changes: 41 additions & 22 deletions docs/papers.md
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Please email [email protected] if you have used py4DSTEM for analysis and your paper is not listed below!

### 2022 (9)
### 2023 (0)

[Correlative image learning of chemo-mechanics in phase-transforming solids](https://www.nature.com/articles/s41563-021-01191-0), Nature Materials (2022)

[Correlative analysis of structure and chemistry of LixFePO4 platelets using 4D-STEM and X-ray ptychography](https://doi.org/10.1016/j.mattod.2021.10.031), Materials Today 52, 102 (2022).

[Visualizing Grain Statistics in MOCVD WSe2 through Four-Dimensional Scanning Transmission Electron Microscopy](https://doi.org/10.1021/acs.nanolett.1c04315), Nano Letters 22, 2578 (2022).
### 2022 (16)

[Electric field control of chirality](https://doi.org/10.1126/sciadv.abj8030), Science Advances 8 (2022).

[Real-Time Interactive 4D-STEM Phase-Contrast Imaging From Electron Event Representation Data: Less computation with the right representation](https://doi.org/10.1109/MSP.2021.3120981), IEEE Signal Processing Magazine 39, 25 (2022).
[Disentangling multiple scattering with deep learning: application to strain mapping from electron diffraction patterns](https://doi.org/10.1038/s41524-022-00939-9), J Munshi*, A Rakowski*, et al., npj Computational Materials 8, 254 (2022)

[Microstructural dependence of defect formation in iron-oxide thin films](https://doi.org/10.1016/j.apsusc.2022.152844), Applied Surface Science 589, 152844 (2022).
[Flexible CO2 Sensor Architecture with Selective Nitrogen Functionalities by One-Step Laser-Induced Conversion of Versatile Organic Ink](https://doi.org/10.1002/adfm.202207406), H Wang et al., Advanced Functional Materials 32, 2207406 (2022)

[Chemical and Structural Alterations in the Amorphous Structure of Obsidian due to Nanolites](https://doi.org/10.1017/S1431927621013957), Microscopy and Microanalysis 28, 289 (2022).
[Defect Contrast with 4D-STEM: Understanding Crystalline Order with Virtual Detectors and Beam Modification](https://doi.org/10.1093/micmic/ozad045) SM Ribet et al., Microscopy and Microanalysis 29, 1087 (2023).

[Nanoscale characterization of crystalline and amorphous phases in silicon oxycarbide ceramics using 4D-STEM](https://doi.org/10.1016/j.matchar.2021.111512), Materials Characterization 181, 111512 (2021).
[Structural heterogeneity in non-crystalline TexSe1−x thin films](https://doi.org/10.1063/5.0094600), B Sari et al., Applied Physics Letters 121, 012101 (2022)

[Disentangling multiple scattering with deep learning: application to strain mapping from electron diffraction patterns](https://arxiv.org/abs/2202.00204), arXiv:2202.00204 (2022).
[Cryogenic 4D-STEM analysis of an amorphouscrystalline polymer blend: Combined nanocrystalline and amorphous phase mapping](https://doi.org/10.1016/j.isci.2022.103882), J Donohue et al., iScience 25, 103882 (2022)

[Hydrogen-assisted decohesion associated with nanosized grain boundary κ-carbides in a high-Mn lightweight steel](https://doi.org/10.1016/j.actamat.2022.118392), MN Elkot et al., Acta Materialia
241, 118392 (2022)

[4D-STEM Ptychography for Electron-Beam-Sensitive Materials](https://doi.org/10.1021/acscentsci.2c01137), G Li et al., ACS Central Science 8, 1579 (2022)

[Developing a Chemical and Structural Understanding of the Surface Oxide in a Niobium Superconducting Qubit](https://doi.org/10.1021/acsnano.2c07913), AA Murthy et al., ACS Nano 16, 17257 (2022)

[Correlative image learning of chemo-mechanics in phase-transforming solids](https://www.nature.com/articles/s41563-021-01191-0), HD Deng et al., Nature Materials (2022)

[Correlative analysis of structure and chemistry of LixFePO4 platelets using 4D-STEM and X-ray ptychography](https://doi.org/10.1016/j.mattod.2021.10.031), LA Hughes*, BH Savitzky, et al., Materials Today 52, 102 (2022)

[Visualizing Grain Statistics in MOCVD WSe2 through Four-Dimensional Scanning Transmission Electron Microscopy](https://doi.org/10.1021/acs.nanolett.1c04315), A Londoño-Calderon et al., Nano Letters 22, 2578 (2022)

[Electric field control of chirality](https://doi.org/10.1126/sciadv.abj8030), P Behera et al., Science Advances 8 (2022)

[Real-Time Interactive 4D-STEM Phase-Contrast Imaging From Electron Event Representation Data: Less computation with the right representation](https://doi.org/10.1109/MSP.2021.3120981), P Pelz et al., IEEE Signal Processing Magazine 39, 25 (2022)

[Microstructural dependence of defect formation in iron-oxide thin films](https://doi.org/10.1016/j.apsusc.2022.152844), BK Derby et al., Applied Surface Science 589, 152844 (2022)

[Chemical and Structural Alterations in the Amorphous Structure of Obsidian due to Nanolites](https://doi.org/10.1017/S1431927621013957), E Kennedy et al., Microscopy and Microanalysis 28, 289 (2022)

[Nanoscale characterization of crystalline and amorphous phases in silicon oxycarbide ceramics using 4D-STEM](https://doi.org/10.1016/j.matchar.2021.111512), Ni Yang et al., Materials Characterization 181, 111512 (2021)



### 2021 (10)

[Cryoforged nanotwinned titanium with ultrahigh strength and ductility](https://doi.org/10.1126/science.abe7252), Science 16, 373, 1363 (2021).
[Cryoforged nanotwinned titanium with ultrahigh strength and ductility](https://doi.org/10.1126/science.abe7252), Science 16, 373, 1363 (2021)

[Strain fields in twisted bilayer graphene](https://doi.org/10.1038/s41563-021-00973-w), Nature Materials 20, 956 (2021).
[Strain fields in twisted bilayer graphene](https://doi.org/10.1038/s41563-021-00973-w), Nature Materials 20, 956 (2021)

[Determination of Grain-Boundary Structure and Electrostatic Characteristics in a SrTiO3 Bicrystal by Four-Dimensional Electron Microscopy](https://doi.org/10.1021/acs.nanolett.1c02960), Nanoletters 21, 9138 (2021).
[Determination of Grain-Boundary Structure and Electrostatic Characteristics in a SrTiO3 Bicrystal by Four-Dimensional Electron Microscopy](https://doi.org/10.1021/acs.nanolett.1c02960), Nanoletters 21, 9138 (2021)

[Local Lattice Deformation of Tellurene Grain Boundaries by Four-Dimensional Electron Microscopy](https://pubs.acs.org/doi/10.1021/acs.jpcc.1c00308), Journal of Physical Chemistry C 125, 3396 (2021).

[Extreme mixing in nanoscale transition metal alloys](https://doi.org/10.1016/j.matt.2021.04.014), Matter 4, 2340 (2021).
[Extreme mixing in nanoscale transition metal alloys](https://doi.org/10.1016/j.matt.2021.04.014), Matter 4, 2340 (2021)

[Multibeam Electron Diffraction](https://doi.org/10.1017/S1431927620024770), Microscopy and Microanalysis 27, 129 (2021).
[Multibeam Electron Diffraction](https://doi.org/10.1017/S1431927620024770), Microscopy and Microanalysis 27, 129 (2021)

[A Fast Algorithm for Scanning Transmission Electron Microscopy Imaging and 4D-STEM Diffraction Simulations](https://doi.org/10.1017/S1431927621012083), Microscopy and Microanalysis 27, 835 (2021).
[A Fast Algorithm for Scanning Transmission Electron Microscopy Imaging and 4D-STEM Diffraction Simulations](https://doi.org/10.1017/S1431927621012083), Microscopy and Microanalysis 27, 835 (2021)

[Fast Grain Mapping with Sub-Nanometer Resolution Using 4D-STEM with Grain Classification by Principal Component Analysis and Non-Negative Matrix Factorization](https://doi.org/10.1017/S1431927621011946), Microscopy and Microanalysis 27, 794
[Fast Grain Mapping with Sub-Nanometer Resolution Using 4D-STEM with Grain Classification by Principal Component Analysis and Non-Negative Matrix Factorization](https://doi.org/10.1017/S1431927621011946), Microscopy and Microanalysis 27, 794 (2021)

[Prismatic 2.0 – Simulation software for scanning and high resolution transmission electron microscopy (STEM and HRTEM)](https://doi.org/10.1016/j.micron.2021.103141), Micron 151, 103141 (2021).
[Prismatic 2.0 – Simulation software for scanning and high resolution transmission electron microscopy (STEM and HRTEM)](https://doi.org/10.1016/j.micron.2021.103141), Micron 151, 103141 (2021)

[4D-STEM of Beam-Sensitive Materials](https://doi.org/10.1021/acs.accounts.1c00073), Accounts of Chemical Research 54, 2543 (2021).
[4D-STEM of Beam-Sensitive Materials](https://doi.org/10.1021/acs.accounts.1c00073), Accounts of Chemical Research 54, 2543 (2021)


### 2020 (3)

[Patterned probes for high precision 4D-STEM bragg measurements](https://doi.org/10.1063/5.0015532), Ultramicroscopy 209, 112890 (2020).

[Patterned probes for high precision 4D-STEM bragg measurements](https://doi.org/10.1063/5.0015532), Ultramicroscopy 209, 112890 (2020)

[Tilted fluctuation electron microscopy](https://doi.org/10.1063/5.0015532), Applied Physics Letters 117, 091903 (2020).
[Tilted fluctuation electron microscopy](https://doi.org/10.1063/5.0015532), Applied Physics Letters 117, 091903 (2020)

[4D-STEM elastic stress state characterisation of a TWIP steel nanotwin](https://arxiv.org/abs/2004.03982), arXiv:2004.03982

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