This repository includes all the codes for Mahmoudi et al. 2018.

• Epigenome_heigth_breadth_bivalent - Provides the R scripts for analyses of the epigenomic datasets.

• Population_RNA-seq - Provides the R scripts for analyses of the population RNA-seq data.

• Single_cell_RNA-seq - Provides the R scripts for analyses of single RNA-seq data.

• Single_cell_RNA-seq_New - Provides the R scripts for new analyses of single RNA-seq data during revision.

• Metabolome - Provides the R scripts for analyses of the metabolome data.