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update rptools + rp2paths versions #147

Merged
merged 63 commits into from
Oct 20, 2023
Merged

update rptools + rp2paths versions #147

merged 63 commits into from
Oct 20, 2023

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guillaume-gricourt and others added 30 commits May 22, 2023 10:49
* fix(get_sbml_model): rm 'parent'

* chore(get_sbml_model): handle errors

* fix(get_sbml_model): fix 'requests' version
* chore(selenzy_wrapper): rm comment

* chore(selenzy-wrapper): rm config

* chore(selenzy-wrapper): rename
* chore(selenzy_wrapper): rm comment

* chore(selenzy-wrapper): rm config

* chore(selenzy-wrapper): rename

* chore(selenzy-wrapper): rename

* chore(selenzy_wrapper): add test
Bumps [tj-actions/changed-files](https://github.com/tj-actions/changed-files) from 35 to 36.
- [Release notes](https://github.com/tj-actions/changed-files/releases)
- [Changelog](https://github.com/tj-actions/changed-files/blob/main/HISTORY.md)
- [Commits](tj-actions/changed-files@v35...v36)

---
updated-dependencies:
- dependency-name: tj-actions/changed-files
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* chore: rm config folders

* fix(get_sbml_model): fix taxid md5

* fix(icfree): update test section

* fix(rp2biosensor): udpate version, add --cache-dir arg

* chore(github): skip `partsgenie` test

* fix(github): missing files

* fix(github): skip aggregate_results if test is skipped

* fix(github): increase timeout

* fix(github): skip temporarly `rpbasicdesign`

---------

Co-authored-by: Guillaume Gricourt <[email protected]>
* feat(workflows): add one workflow
* fix(workflows): rm unused files

* feat(workflows): add `pathway_analysis`
* fix(rp2biosensor): add attribute to test tag
* fix(tools): selenzy_wrapper, update test section
guillaume-gricourt and others added 29 commits July 3, 2023 12:37
* feat(tools): get_sbml_model, enable to load file from history
Bumps [actions/checkout](https://github.com/actions/checkout) from 3 to 4.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](actions/checkout@v3...v4)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [tj-actions/changed-files](https://github.com/tj-actions/changed-files) from 37 to 39.
- [Release notes](https://github.com/tj-actions/changed-files/releases)
- [Changelog](https://github.com/tj-actions/changed-files/blob/main/HISTORY.md)
- [Commits](tj-actions/changed-files@v37...v39)

---
updated-dependencies:
- dependency-name: tj-actions/changed-files
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Updating dnabot from version 3.1.0 to 4.1.0

* fix(tools): dnabot, update test

* fix(tools): dnabot, syntax
* feat(tools): add `neo4jsbml`

* docs(tools): update
* feat(rpextractsink): add --standalone arg

* chore(rp2paths): update version

* chore(rptools): v 6.3.0
@breakthewall breakthewall merged commit e8f9bba into stable Oct 20, 2023
9 of 31 checks passed
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2 participants