Update #89
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Update | |
| on: | |
| schedule: | |
| - cron: "0 1 * * 1" | |
| permissions: | |
| contents: write | |
| pull-requests: write | |
| jobs: | |
| list: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| matrix: ${{ steps.set-matrix.outputs.matrix }} | |
| steps: | |
| - name: 'Checkout' | |
| uses: actions/checkout@v4 | |
| - name: 'List repos' | |
| id: set-matrix | |
| run: echo "matrix=$(find tools -mindepth 1 -maxdepth 1 -type d | jq -R -s -c 'split("\n")[:-1] | map(split("/")[-1])')" >> "${GITHUB_OUTPUT}" | |
| update: | |
| needs: list | |
| runs-on: ubuntu-latest | |
| strategy: | |
| max-parallel: 1 | |
| matrix: | |
| repo: ${{ fromJson(needs.list.outputs.matrix) }} | |
| steps: | |
| - name: 'Checkout' | |
| uses: actions/checkout@v4 | |
| with: | |
| token: ${{ secrets.USER_TOKEN }} | |
| ref: main | |
| - name: "Setup python" | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.10' | |
| cache: 'pip' # caching pip dependencies | |
| cache-dependency-path: | | |
| env/requirements.txt | |
| - name: 'Install packages' | |
| run: | | |
| pip install -r env/requirements.txt | |
| - name: 'Update repositories' | |
| run: | | |
| # git credentials | |
| git config --global user.email "${{ secrets.USER_EMAIL }}" | |
| git config --global user.name "${{ secrets.USER_NAME }}" | |
| echo "${{ secrets.USER_TOKEN }}" > secrets.txt | |
| gh auth login --with-token < secrets.txt | |
| rm secrets.txt | |
| git fetch --all | |
| git pull origin main | |
| BASEDIR=`pwd` | |
| REPO=${{ matrix.repo }} | |
| BRANCH="${GITHUB_REPOSITORY_OWNER}"-"${REPO}" | |
| echo "Repository: ${REPO}" | |
| # checkout branch, create if it doesn't exist | |
| if [[ $(gh pr list --limit 10000 | grep "${BRANCH}".\s*OPEN) ]] | |
| then | |
| echo "PR exists, we will checkout the branch and add to it" | |
| git checkout --track "origin/${BRANCH}" | |
| else | |
| if [[ $(git branch -a --list "origin/${BRANCH}") ]] | |
| then | |
| echo "Branch exists without an open PR - deleting" | |
| git push origin --delete "${BRANCH}" | |
| fi | |
| echo "Creating branch and checking out" | |
| git checkout -b "${BRANCH}" origin/main | |
| fi | |
| echo "Running autoupdate command..." | |
| planemo autoupdate "tools/${REPO}" > "${BASEDIR}/autoupdate.log" | |
| echo "Check to open PR" | |
| if [[ $(git diff "tools/${REPO}") ]] | |
| then | |
| echo "Create title" | |
| TITLE=$(python "${BASEDIR}/scripts/pr_text.py" --repo "${REPO}" --log "${BASEDIR}/autoupdate.log" --shed "tools/${REPO}/.shed.yml" --out "${BASEDIR}/body.txt") | |
| # first check if a closed PR exists with the same title - if so, we don't continue | |
| if [[ ! $(gh pr list -s closed --limit 1000 | grep "$TITLE" | grep CLOSED) ]] | |
| then | |
| echo "Adding..." | |
| git add "tools/${REPO}" | |
| echo "Committing..." | |
| git commit -m "${TITLE}" | |
| echo "Push branch to remote..." | |
| git push origin "${BRANCH}" | |
| OLD_TITLE=$(gh pr list --limit 1000 | grep "${BRANCH}" | cut -f 2) | |
| if [[ "${OLD_TITLE}" ]] # just need to update PR title | |
| then | |
| if [[ "${OLD_TITLE}" == *\) ]] # older PRs | |
| then | |
| NEW_TITLE=$(echo "${OLD_TITLE}" | cut --complement -f 4 -d ' ' && echo " to " && echo "${TITLE}" | cut -f 7 -d ' ') | |
| else # newer PRs | |
| NEW_TITLE=$(echo "${OLD_TITLE}" | cut --complement -f 7 -d ' ' && echo "${TITLE}" | cut -f 7 -d ' ') | |
| fi | |
| PR_NUMBER=$(gh pr list --limit 1000 | grep "${BRANCH}" | cut -f 1) | |
| gh pr edit "${PR_NUMBER}" -t "${NEW_TITLE}" | |
| else # we need to create a PR | |
| echo "Creating a PR..." | |
| gh pr create --base main --head "${BRANCH}" --title "${TITLE}" --repo brsynth/synbiocad-galaxy-wrappers --body-file "${BASEDIR}/body.txt" | |
| fi | |
| fi | |
| fi |