TestWorkflows #31
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| name: TestWorkflows | |
| on: | |
| schedule: | |
| - cron: '0 0 * * 1' | |
| jobs: | |
| list: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| matrix: ${{ steps.set-matrix.outputs.matrix }} | |
| steps: | |
| - name: 'Checkout' | |
| uses: actions/checkout@v4 | |
| - name: 'List repos' | |
| id: set-matrix | |
| run: echo "matrix=$(find workflows -mindepth 1 -maxdepth 1 -type d | jq -R -s -c 'split("\n")[:-1] | map(split("/")[-1])')" >> "${GITHUB_OUTPUT}" | |
| skip: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| matrix: ${{ steps.set-matrix.outputs.matrix }} | |
| steps: | |
| - name: 'Checkout' | |
| uses: actions/checkout@v4 | |
| - name: 'List repos' | |
| id: set-matrix | |
| run: | | |
| matrix=$(jq -R -s -c '[split("\n")[] | select(.|length>0)]' .github/workflows/test_workflows_skip.txt) | |
| echo "Number of repos: ${matrix}" | |
| echo "matrix=$matrix" >> "${GITHUB_OUTPUT}" | |
| test: | |
| needs: [list, skip] | |
| runs-on: ubuntu-latest | |
| strategy: | |
| max-parallel: 1 | |
| matrix: | |
| repo: ${{ fromJson(needs.list.outputs.matrix) }} | |
| steps: | |
| - name: 'Checkout' | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: "Setup python" | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| cache: 'pip' # caching pip dependencies | |
| cache-dependency-path: | | |
| env/requirements.txt | |
| - name: 'Install packages' | |
| run: | | |
| pip install -r env/requirements.txt | |
| - name: 'Worfklow Lint' | |
| run: | | |
| planemo workflow_lint \ | |
| --fail_level error \ | |
| "workflows/${{ matrix.repo }}" | |
| - name: 'Test worflow' | |
| if: ${{ ! contains(fromJson(needs.skip.outputs.matrix), matrix.repo) }} | |
| timeout-minutes: 60 | |
| run: | | |
| planemo test \ | |
| --engine external_galaxy \ | |
| --galaxy_url https://galaxy-synbiocad.org \ | |
| --galaxy_user_key "${{ secrets.GG_SYNBIOCAD_TOKEN }}" \ | |
| "workflows/${{ matrix.repo }}/${{ matrix.repo }}.ga" |