Update #102
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| name: Update | |
| on: | |
| schedule: | |
| - cron: "0 1 * * 1" | |
| permissions: | |
| contents: write | |
| pull-requests: write | |
| jobs: | |
| list: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| matrix: ${{ steps.set-matrix.outputs.matrix }} | |
| steps: | |
| - name: 'Checkout' | |
| uses: actions/checkout@v4 | |
| - name: 'List repos' | |
| id: set-matrix | |
| run: echo "matrix=$(find tools -mindepth 1 -maxdepth 1 -type d | jq -R -s -c 'split("\n")[:-1] | map(split("/")[-1])')" >> "${GITHUB_OUTPUT}" | |
| update: | |
| needs: list | |
| runs-on: ubuntu-latest | |
| strategy: | |
| max-parallel: 1 | |
| matrix: | |
| repo: ${{ fromJson(needs.list.outputs.matrix) }} | |
| steps: | |
| - name: 'Checkout' | |
| uses: actions/checkout@v4 | |
| with: | |
| token: ${{ secrets.USER_TOKEN }} | |
| ref: main | |
| - name: "Setup python" | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.10' | |
| cache: 'pip' # caching pip dependencies | |
| cache-dependency-path: | | |
| env/requirements.txt | |
| - name: 'Install packages' | |
| run: | | |
| pip install -r env/requirements.txt | |
| - name: 'Update repositories' | |
| run: | | |
| # git credentials | |
| git config --global user.email "${{ secrets.USER_EMAIL }}" | |
| git config --global user.name "${{ secrets.USER_NAME }}" | |
| echo "${{ secrets.USER_TOKEN }}" > secrets.txt | |
| gh auth login --with-token < secrets.txt | |
| rm secrets.txt | |
| git fetch --all | |
| git pull origin main | |
| BASEDIR=`pwd` | |
| REPO=${{ matrix.repo }} | |
| BRANCH="${GITHUB_REPOSITORY_OWNER}"-"${REPO}" | |
| echo "Repository: ${REPO}" | |
| # checkout branch, create if it doesn't exist | |
| if [[ $(gh pr list --limit 10000 | grep "${BRANCH}".\s*OPEN) ]] | |
| then | |
| echo "PR exists, we will checkout the branch and add to it" | |
| git checkout --track "origin/${BRANCH}" | |
| else | |
| if [[ $(git branch -a --list "origin/${BRANCH}") ]] | |
| then | |
| echo "Branch exists without an open PR - deleting" | |
| git push origin --delete "${BRANCH}" | |
| fi | |
| echo "Creating branch and checking out" | |
| git checkout -b "${BRANCH}" origin/main | |
| fi | |
| echo "Running autoupdate command..." | |
| planemo autoupdate "tools/${REPO}" > "${BASEDIR}/autoupdate.log" | |
| echo "Check to open PR" | |
| if [[ $(git diff "tools/${REPO}") ]] | |
| then | |
| echo "Create title" | |
| TITLE=$(python "${BASEDIR}/scripts/pr_text.py" --repo "${REPO}" --log "${BASEDIR}/autoupdate.log" --shed "tools/${REPO}/.shed.yml" --out "${BASEDIR}/body.txt") | |
| # first check if a closed PR exists with the same title - if so, we don't continue | |
| if [[ ! $(gh pr list -s closed --limit 1000 | grep "$TITLE" | grep CLOSED) ]] | |
| then | |
| echo "Adding..." | |
| git add "tools/${REPO}" | |
| echo "Committing..." | |
| git commit -m "${TITLE}" | |
| echo "Push branch to remote..." | |
| git push origin "${BRANCH}" | |
| OLD_TITLE=$(gh pr list --limit 1000 | grep "${BRANCH}" | cut -f 2) | |
| if [[ "${OLD_TITLE}" ]] # just need to update PR title | |
| then | |
| if [[ "${OLD_TITLE}" == *\) ]] # older PRs | |
| then | |
| NEW_TITLE=$(echo "${OLD_TITLE}" | cut --complement -f 4 -d ' ' && echo " to " && echo "${TITLE}" | cut -f 7 -d ' ') | |
| else # newer PRs | |
| NEW_TITLE=$(echo "${OLD_TITLE}" | cut --complement -f 7 -d ' ' && echo "${TITLE}" | cut -f 7 -d ' ') | |
| fi | |
| PR_NUMBER=$(gh pr list --limit 1000 | grep "${BRANCH}" | cut -f 1) | |
| gh pr edit "${PR_NUMBER}" -t "${NEW_TITLE}" | |
| else # we need to create a PR | |
| echo "Creating a PR..." | |
| gh pr create --base main --head "${BRANCH}" --title "${TITLE}" --repo brsynth/synbiocad-galaxy-wrappers --body-file "${BASEDIR}/body.txt" | |
| fi | |
| fi | |
| fi |