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Issues: broadinstitute/gnomad-mitochondria

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Issues list

Add freemix to pipeline

#46 opened Jan 3, 2022 by klaricch

Update haplocheck version

#41 opened Nov 10, 2021 by klaricch

Improve README documentation Epic

#22 opened Sep 9, 2021 by gtiao

Re-review merged scripts to make sure they follow formatting standards in main gnomad_methods repo

#21 opened Aug 25, 2021 by klaricch

Create subsetting capability to allow return of mitochondrial calls to contributing collaborators

#20 opened Aug 25, 2021 by klaricch

Create read visualizations for mitochondria variants

#19 opened Aug 25, 2021 by klaricch

Add mitochondrial gene constraint annotations to MT callset

#18 opened Aug 25, 2021 by klaricch

Investigate drop in sensitivity for low heteroplasmic variants

#17 opened Aug 25, 2021 by klaricch

Clickable graphic to navigate to mtDNA genes

#16 opened Aug 25, 2021 by klaricch

Add MNV annotations to production pipeline

#15 opened Aug 25, 2021 by klaricch

Consider creating sample-specific heteroplasmy thresholds dependent on mtCN

#14 opened Aug 25, 2021 by klaricch

Add option to output to gnomad-specific paths

#13 opened Aug 25, 2021 by klaricch

Add updated example JSON

#10 opened Jun 30, 2021 by klaricch

Add requirements and dependencies to readme

#7 opened Jun 23, 2021 by klaricch

Add explanation of output files to readme

#6 opened Jun 23, 2021 by klaricch

Add example input files

#5 opened Jun 23, 2021 by klaricch

Create phenotype-related subsets for mitochondria cohort for v3

#2 opened Jun 16, 2021 by klaricch

ProTip! Adding no:label will show everything without a label.

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