Add basic whole brain microscopy analysis course

docs/source/community/courses/index.md

@@ -1,9 +1,16 @@
 # Courses
 
-Details of BrainGlobe training courses
+Details of BrainGlobe training courses:
 
+## Course materials
 ```{toctree}
 :maxdepth: 1
 
-dec-2023/index
+materials/whole-brain-analysis/index
+```
+## Scheduled courses
+```{toctree}
+:maxdepth: 1
+
+scheduled/dec-2023/index
 ```

docs/source/community/courses/materials/whole-brain-analysis/index.md

@@ -0,0 +1,21 @@
+# Whole brain microscopy analysis with BrainGlobe and napari
+
+This is designed as an in-person one-day course. However, our aim is that the materials can be referred to after the 
+course, and can be used for self-paced learning. 
+
+## Schedule
+### Introduction to BrainGlobe (30 mins)
+
+### Installing BrainGlobe (30 mins)
+
+### Registering whole brain microscopy images with brainreg (30 mins)
+
+### Segmenting structures in whole brain microscopy images with brainglobe-segmentation (30 mins)
+
+### Detecting cells in large 3D images with cellfinder (90 mins)
+
+### Analysing cell positions in atlas space (30 mins)
+
+### Visualisation of data in atlas space with brainrender and brainrender-napari (30 mins)
+
+### Tour of other BrainGlobe tools and wrap-up (30 mins)