birtwistlelab · JonahRileyHuggins · Mar 13, 2024 · Mar 13, 2024 · Mar 13, 2024 · Mar 13, 2024
diff --git a/.dockerignore b/.dockerignore
diff --git a/.gitignore b/.gitignore
@@ -1,3 +1,17 @@
+# Python files
+*.py[cod]
+__pycache__/
+
+# Simulation results except the README in default folder and some results for
+# default control simulations
+SPARCED/results/*
+!SPARCED/results/New-Simulation
+!SPARCED/results/Control
+SPARCED/results/New-Simulation/*
+!SPARCED/results/New-Simulation/README.md
+SPARCED/models/SPARCED_standard/results
+benchmarks/test_benchmark
+
 old*
 *.ipynb_check*
 .nextflow*

diff --git a/.gitmodules b/.gitmodules
diff --git a/Demo/GrowthStim_G_demo.txt b/Demo/GrowthStim_G_demo.txt
diff --git a/Demo/GrowthStim_S_demo.txt b/Demo/GrowthStim_S_demo.txt
diff --git a/Demo/Initializer.txt b/Demo/Initializer.txt
diff --git a/Demo/README.md b/Demo/README.md
diff --git a/Demo/Readme.md b/Demo/Readme.md