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@bionanogenomics

Bionano Genomics

Tools here are not fully validated yet, but still in development stage.

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  1. JBrowsePlugin JBrowsePlugin Public

    JBrowse plugin to support BioNano Genomics files

    JavaScript 7 3

  2. cmap2fa cmap2fa Public

    Tool for Transforming CMAP to FASTA Format

    Perl 3 1

  3. File-Format-Specification-Sheets File-Format-Specification-Sheets Public

    Specifications for Bionano Genomic proprietary file formats

    2

  4. splitSaphyrBNXByScan splitSaphyrBNXByScan Public

    Python 2 1

  5. smap2vcf smap2vcf Public

    Tool for Transforming SMAP to VCF Format

    1 1

  6. svmerge2vcf svmerge2vcf Public

    Tool for Transforming SVMerge to VCF Format

    1

Repositories

Showing 10 of 12 repositories
  • local_guided_assembly Public
    bionanogenomics/local_guided_assembly’s past year of commit activity
    Shell 1 0 0 0 Updated Aug 23, 2024
  • molecule_distance Public
    bionanogenomics/molecule_distance’s past year of commit activity
    R 1 0 0 0 Updated Aug 23, 2024
  • virtual_karyotype_snakemake Public

    This repository contains a Snakemake workflow for the generation and visualization of virtual karyotypes.

    bionanogenomics/virtual_karyotype_snakemake’s past year of commit activity
    Python 1 0 1 0 Updated Dec 19, 2023
  • HRD Public
    bionanogenomics/HRD’s past year of commit activity
    Perl 0 0 0 0 Updated May 2, 2023
  • splitSaphyrBNXByScan Public
    bionanogenomics/splitSaphyrBNXByScan’s past year of commit activity
    Python 2 1 0 0 Updated Sep 23, 2020
  • smap2vcf Public

    Tool for Transforming SMAP to VCF Format

    bionanogenomics/smap2vcf’s past year of commit activity
    1 MIT 1 1 0 Updated Jan 31, 2020
  • svmerge2vcf Public

    Tool for Transforming SVMerge to VCF Format

    bionanogenomics/svmerge2vcf’s past year of commit activity
    1 0 1 0 Updated Jan 31, 2020
  • File-Format-Specification-Sheets Public

    Specifications for Bionano Genomic proprietary file formats

    bionanogenomics/File-Format-Specification-Sheets’s past year of commit activity
    2 0 1 0 Updated Jan 23, 2020
  • JBrowsePlugin Public

    JBrowse plugin to support BioNano Genomics files

    bionanogenomics/JBrowsePlugin’s past year of commit activity
    JavaScript 7 3 6 2 Updated Sep 24, 2018
  • ClusterArguments Public

    Running the assembly command-line on a cluster requires a properly configured clusterArgument.xml file (-C parameter). Users need to configure the clusterArguments_custom.xml for their own cluster.

    bionanogenomics/ClusterArguments’s past year of commit activity
    1 1 0 0 Updated Dec 20, 2017
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