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null check with_from items #660

Merged
merged 5 commits into from
Nov 23, 2023
Merged

null check with_from items #660

merged 5 commits into from
Nov 23, 2023

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sierra-moxon
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@kltm
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kltm commented Nov 21, 2023

@dustine32
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@mugitty is going to push an update to this qc_null_check branch to get the failing test_go_rule_16 test to pass.

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mugitty commented Nov 22, 2023

After discussing with @dustine32, we decided to make additional changes. I have committed additional changes

@mugitty mugitty requested a review from kltm November 22, 2023 19:15
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Failure of gorule16 is soft. Need to ensure assoc.evidence.with_support_from is not None before traversing

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@mugitty mugitty Nov 22, 2023

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Gorule16 needs to verify that for annotation with code ECO, at least one of the with/from is a go term that is not same as the go term for the annotation

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@mugitty Looks good to me. The travis tests and validate.py rule all pass so merge whenever.

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Added test case for Gorule16 where GPAD parser creates annotation with evidence code ECO that does not have a with/from

@mugitty mugitty merged commit 445ed04 into master Nov 23, 2023
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@mugitty mugitty deleted the qc_null_check branch May 6, 2024 17:45
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4 participants