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Add janitor to package list
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AshKernow committed Sep 12, 2023
1 parent 978896f commit d16be51
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Showing 2 changed files with 4 additions and 2 deletions.
3 changes: 2 additions & 1 deletion Precourse_Instructions.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -206,7 +206,7 @@ out whether to use CRAN or Bioconductor for each package.
BiocManager::install(c("AnnotationDbi", "AnnotationHub", "circlize",
"clusterProfiler", "ComplexHeatmap", "DESeq2",
"enrichplot", "ensembldb", "gganimate", "ggdendro",
"ggfortify", "ggrepel", "ggvenn", "msigdbr",
"ggfortify", "ggrepel", "ggvenn", "janitor", "msigdbr",
"org.Mm.eg.db", "pathview", "tximport"))
```

Expand All @@ -229,6 +229,7 @@ library(ggdendro)
library(ggfortify)
library(ggrepel)
library(ggvenn)
library(janitor)
library(msigdbr)
library(org.Mm.eg.db)
library(pathview)
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3 changes: 2 additions & 1 deletion Precourse_Instructions.html
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Expand Up @@ -302,7 +302,7 @@ <h2><span class="header-section-number">3.2</span> Install Packages</h2>
<pre class="r"><code>BiocManager::install(c(&quot;AnnotationDbi&quot;, &quot;AnnotationHub&quot;, &quot;circlize&quot;,
&quot;clusterProfiler&quot;, &quot;ComplexHeatmap&quot;, &quot;DESeq2&quot;,
&quot;enrichplot&quot;, &quot;ensembldb&quot;, &quot;gganimate&quot;, &quot;ggdendro&quot;,
&quot;ggfortify&quot;, &quot;ggrepel&quot;, &quot;ggvenn&quot;, &quot;msigdbr&quot;,
&quot;ggfortify&quot;, &quot;ggrepel&quot;, &quot;ggvenn&quot;, &quot;janitor&quot;, &quot;msigdbr&quot;,
&quot;org.Mm.eg.db&quot;, &quot;pathview&quot;, &quot;tximport&quot;)) </code></pre>
<p>Again, it may take some time to install all of the packages.</p>
<ol start="2" style="list-style-type: decimal">
Expand All @@ -321,6 +321,7 @@ <h2><span class="header-section-number">3.2</span> Install Packages</h2>
library(ggfortify)
library(ggrepel)
library(ggvenn)
library(janitor)
library(msigdbr)
library(org.Mm.eg.db)
library(pathview)
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