update index

bioinformatics-core-shared-training · Jun 21, 2024 · 656f13c · 656f13c
1 parent 8cab521
commit 656f13c
Showing 1 changed file with 9 additions and 10 deletions.
diff --git a/index.md b/index.md
@@ -51,24 +51,24 @@ differential expression analysis of RNA-seq data.
 10:15 - 11:00 [Raw read file format and QC](Bulk_RNAseq_Course_Base/Markdowns/02_FastQC_introduction.html) - Jon
 
   - [Practical](Bulk_RNAseq_Course_Base/Markdowns/02_FastQC_practical.html)
-<!--  - [Practical solutions](Bulk_RNAseq_Course_Base/Markdowns/02_FastQC_practical.Solutions.html) -->
+  - [Practical solutions](Bulk_RNAseq_Course_Base/Markdowns/02_FastQC_practical.Solutions.html)
 
 11:00 - 13:30 [Alignment and Quantification of Gene Expression with Salmon](Bulk_RNAseq_Course_Base/Markdowns/03_Quantification_with_Salmon_introduction.html) - Abbi
 
   - [Practical](Bulk_RNAseq_Course_Base/Markdowns/03_Quantification_with_Salmon_practical.html)  
-<!--  - [Practical solutions](Bulk_RNAseq_Course_Base/Markdowns/03_Quantification_with_Salmon_practical.Solutions.html) -->
+  - [Practical solutions](Bulk_RNAseq_Course_Base/Markdowns/03_Quantification_with_Salmon_practical.Solutions.html) 
 
 13:30 - 14:30 Lunch
 
 14:30 - 15:30 [QC of alignment](Bulk_RNAseq_Course_Base/Markdowns/04_Quality_Control_introduction.html) - Abbi
 
   - [Practical](Bulk_RNAseq_Course_Base/Markdowns/04_Quality_Control_practical.html) ([pdf](Bulk_RNAseq_Course_Base/Markdowns/04_Quality_Control_practical.pdf))  
-<!--  - [Practical solutions](Bulk_RNAseq_Course_Base/Markdowns/04_Quality_COntrol_practical.Solutions.html) ([pdf](Bulk_RNAseq_Course_Base/Markdowns/04_Quality_Control_practical.Solutions.pdf)) -->
+  - [Practical solutions](Bulk_RNAseq_Course_Base/Markdowns/04_Quality_COntrol_practical.Solutions.html) ([pdf](Bulk_RNAseq_Course_Base/Markdowns/04_Quality_Control_practical.Solutions.pdf))
 
 15.30 - 17.30 [Data Exploration in R](Bulk_RNAseq_Course_Base/Markdowns/05_Data_Exploration.html) ([pdf](Bulk_RNAseq_Course_Base/Markdowns/05_Data_Exploration.pdf)) - Rui
 
-<!--  - [Practical solutions](Bulk_RNAseq_Course_Base/Markdowns/05_Data_Exploration.Solutions.html) ([pdf](Bulk_RNAseq_Course_Base/Markdowns/05_Data_Exploration.Solutions.pdf)) -->
-<!--  - [Live Script](live_scripts/data_exploration.R) -->
+  - [Practical solutions](Bulk_RNAseq_Course_Base/Markdowns/05_Data_Exploration.Solutions.html) ([pdf](Bulk_RNAseq_Course_Base/Markdowns/05_Data_Exploration.Solutions.pdf))
+  - [Live Script](live_scripts/20240621_initial_exploration.R)
 
 
 ### Day 2
@@ -77,12 +77,11 @@ differential expression analysis of RNA-seq data.
 
 9:30 - 10:15  [Introduction to RNAseq Analysis in R](Bulk_RNAseq_Course_Base/Markdowns/06_Introduction_to_RNAseq_Analysis_in_R.html) - Jiayin
 
-10:15 - 13:00 Statistical Analysis of Bulk RNAseq Data
+10:15 - 11.30 [Statistical Analysis of Bulk RNAseq Data](Bulk_RNAseq_Course_Base/additional_scripts_and_materials/RNA-seq_stats.pdf) - Ash/Abbi
 
-  - Part I: [Statistics of RNA-seq analysis](Bulk_RNAseq_Course_Base/additional_scripts_and_materials/RNA-seq_stats.pdf) - Ash/Abbi
-  - Part II: [Linear Models in R and DESeq2](Bulk_RNAseq_Course_Base/Markdowns/07_Linear_Models.html) ([pdf](Bulk_RNAseq_Course_Base/Markdowns/07_Linear_Models.pdf)) - Ash/Abbi
-    - [Slides](Bulk_RNAseq_Course_Base/additional_scripts_and_materials/Statistical_models_in_R_DESeq2.pdf)
-    - Find the worksheet in `Course_Materials/stats/models_in_r_worksheet.R`
+11.30 - 13.00 [Linear Models in R and DESeq2](Bulk_RNAseq_Course_Base/additional_scripts_and_materials/Statistical_models_in_R_DESeq2.pdf)
+
+  - 
 
 13:00 - 14:00 Lunch