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update submodule
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@AbbiEdwards
AbbiEdwards committed Sep 30, 2024
1 parent a91a928 commit bfc867b
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2 changes: 1 addition & 1 deletion Bulk_RNAseq_Course_Base
Submodule Bulk_RNAseq_Course_Base updated 77 files
+29 −340 Markdowns/01_Introduction_to_RNAseq_Methods.Rmd
+32 −310 Markdowns/01_Introduction_to_RNAseq_Methods.html
+19 −47 Markdowns/02_FastQC_introduction.Rmd
+24 −37 Markdowns/02_FastQC_introduction.html
+48 −61 Markdowns/03_Quantification_with_Salmon_introduction.Rmd
+40 −65 Markdowns/03_Quantification_with_Salmon_introduction.html
+5 −5 Markdowns/04_Quality_Control_introduction.Rmd
+22 −14 Markdowns/04_Quality_Control_introduction.html
+66 −0 Markdowns/05_Data_Exploration_Slides.Rmd
+3,310 −0 Markdowns/05_Data_Exploration_Slides.html
+8 −8 Markdowns/09_Annotation.Rmd
+4 −8 Markdowns/09_Annotation.html
+ − Markdowns/09_Annotation.pdf
+432 −0 Markdowns/10_Data_Visualisation.Rmd
+105 −0 Markdowns/10_Data_Visualisation_solutions.Rmd
+ − additional_scripts_and_materials/RNA-seq_stats.pptx
+ − images/01s_Illumina_SBS.1.png
+ − images/01s_Illumina_SBS.2.png
+0 −0 images/01s_RNA_Extraction.svg
+ − images/01s_RNAseq_WorkFlow.png
+ − images/01s_case_study.png
+0 −0 images/01s_libprep_OtherRNA.svg
+0 −0 images/01s_libprep_mRNA.svg
+0 −0 images/01s_libprep_rRNA.svg
+0 −0 images/01s_polyA_selection.svg
+0 −0 images/01s_ribominus_selection.svg
+0 −0 images/01s_workflow_3Day.svg
+ − images/02s_FastQC_logo.png
+ − images/02s_fastqc_bad1.png
+ − images/02s_fastqc_bad2.png
+ − images/02s_fastqc_bad3.png
+ − images/02s_fastqc_bad4.png
+ − images/02s_fastqc_good1.png
+ − images/02s_fastqc_good2.png
+ − images/02s_fastqc_good3.png
+ − images/02s_fastqc_good4.png
+ − images/02s_fq.png
+ − images/02s_fq_3rd_line.png
+ − images/02s_fq_headers.png
+ − images/02s_fq_quality.png
+ − images/02s_fq_seq.png
+0 −0 images/03s_GappedAlignment.svg
+0 −0 images/03s_Read_counting_2.svg
+ − images/03s_SAM_alignment_1c.png
+0 −0 images/03s_SRAlignment.svg
+91 −0 images/03s_aln_quant_overview.svg
+0 −0 images/03s_quasi_mapping_1.svg
+0 −0 images/03s_quasi_mapping_2.svg
+0 −0 images/03s_quasi_mapping_3.svg
+0 −0 images/04s_Insert_Size.svg
+0 −0 images/04s_Insert_Size_QC.svg
+0 −0 images/04s_TranscriptCoverage.svg
+ − images/05s_PCA.png
+ − images/05s_log2countsBoxPlot.png
+ − images/05s_rawCountsBoxPlot.png
+ − images/IlluminaLibraryPrep1.png
+ − images/IlluminaLibraryPrep2.png
+ − images/Illumina_SBS.001.png
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+ − images/Illumina_SBS.018.png
+ − images/Illumina_SBS.019.png
+ − images/quasi-mapping_overview.png

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