Merge pull request #8 from bioimage-io/dev

Fixing the docker file build jjank

.github/workflows/build-container.yml

@@ -47,10 +47,10 @@ jobs:
         run: |
           while IFS= read -r dir; do
             if [[ -n "$dir" ]]; then
-              docker_context="./$dir"
+              dockerfile="./$dir/Dockerfile"
               image_name=$(basename "$dir") # Extracts the name of the directory
-              docker build "$docker_context" -t ${{ env.REGISTRY }}/${{ github.repository_owner }}/$image_name:latest
-              docker push ${{ env.REGISTRY }}/${{ github.repository_owner }}/$image_name:latest
+              docker build -f "$dockerfile" -t ${{ env.REGISTRY }}/${{ github.repository_owner }}/$image_name:latest
+              docker push ${{ env.REGISTRY }}/${{ github.repository_owner }}/$image_name:latest . 
               # tag the image with the short SHA
               docker tag ${{ env.REGISTRY }}/${{ github.repository_owner }}/$image_name:latest ${{ env.REGISTRY }}/${{ github.repository_owner }}/$image_name:${{ env.SHORT_SHA }}
               docker push ${{ env.REGISTRY }}/${{ github.repository_owner }}/$image_name:${{ env.SHORT_SHA }}

environments/bioengine/Dockerfile

@@ -1,3 +1,5 @@
 FROM ghcr.io/amun-ai/hypha:0.15.51
-
-RUN pip install https://github.com/bioimage-io/bioengine/archive/refs/heads/main.zip
+# WORKDIR /app
+COPY . /app
+RUN pip install -r /app/requirements.txt
+RUN pip install /app