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Build vsearch for osx-arm64 #49117

Merged
merged 6 commits into from
Jul 11, 2024
Merged

Build vsearch for osx-arm64 #49117

merged 6 commits into from
Jul 11, 2024

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colinbrislawn
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@colinbrislawn colinbrislawn commented Jul 11, 2024

no idea if this should even work, but let's try!

Current error is that it's using the m4 that comes with macs, not the one from conda. Strange!

01:20:07 BIOCONDA INFO (ERR) autom4te: error: need GNU m4 1.4 or later: /usr/bin/m4
01:20:07 BIOCONDA INFO (ERR) aclocal: error: /opt/mambaforge/envs/bioconda/conda-bld/vsearch_1720660763326/_build_env/bin/autom4te failed with exit status: 1
01:20:07 BIOCONDA INFO (ERR) autoreconf: error: aclocal failed with exit status: 1

@martin-g, would you be willing to have a look?

no idea if this _should_ even work, but let's try!
@colinbrislawn colinbrislawn added help wanted osx-arm64 Related to adding osx-arm64 support labels Jul 11, 2024
@colinbrislawn colinbrislawn changed the title Update vsearch to include osx-arm64 build Build vsearch for osx-arm64 Jul 11, 2024
martin-g added 2 commits July 11, 2024 10:34
Signed-off-by: Martin Tzvetanov Grigorov <[email protected]>
Signed-off-by: Martin Tzvetanov Grigorov <[email protected]>
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@colinbrislawn It is fixed!

@martin-g martin-g merged commit d0c68cb into bioconda:master Jul 11, 2024
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tcezard pushed a commit to tcezard/bioconda-recipes that referenced this pull request Sep 12, 2024
* add osx-arm64

no idea if this _should_ even work, but let's try!

* Update build.sh

* Update meta.yaml

* Enable debug for vsearch's build.sh

Signed-off-by: Martin Tzvetanov Grigorov <[email protected]>

* Add m4 as a build dependency

Signed-off-by: Martin Tzvetanov Grigorov <[email protected]>

* Set M4 env var to point to the m4 binary we prefer to use

https://lists.gnu.org/archive/html/autoconf/2003-12/msg00243.html

Signed-off-by: Martin Tzvetanov Grigorov <[email protected]>

---------

Signed-off-by: Martin Tzvetanov Grigorov <[email protected]>
Co-authored-by: Martin Tzvetanov Grigorov <[email protected]>
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2 participants