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Dev #345
Dev #345
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Changes to be committed: deleted: docs/bco_scores.json modified: docs/deployment/productionDeployment.md new file: docs/newProductionInstance.md
Changes to be committed: modified: biocompute/apis.py modified: biocompute/urls.py modified: requirements.txt
biocompute-objects/portal_userdb#380 Changes to be committed: modified: .github/workflows/django.yml modified: biocompute/apis.py modified: biocompute/models.py modified: config/settings.py modified: config/urls.py
Updated the function to check locally for the most used schemas. Improves testing and speed in BCO validation. Changes to be committed: modified: biocompute/services.py renamed: config/IEEE/2791object.json -> config/schemas/2791object.json new file: config/schemas/dataset_extension.json renamed: config/IEEE/description_domain.json -> config/schemas/description_domain.json renamed: config/IEEE/error_domain.json -> config/schemas/error_domain.json renamed: config/IEEE/execution_domain.json -> config/schemas/execution_domain.json new file: config/schemas/fhir_extension.json new file: config/schemas/galaxy_extension.json renamed: config/IEEE/io_domain.json -> config/schemas/io_domain.json new file: config/schemas/license_extension.json renamed: config/IEEE/parametric_domain.json -> config/schemas/parametric_domain.json renamed: config/IEEE/provenance_domain.json -> config/schemas/provenance_domain.json new file: config/schemas/scm_extension.json renamed: config/IEEE/usability_domain.json -> config/schemas/usability_domain.json
Changes to be committed: modified: biocompute/services.py new file: config/schemas/1.1.0/dataset_extension.json new file: config/schemas/1.1.0/fhir_extension.json new file: config/schemas/1.1.0/galaxy_extension.json new file: config/schemas/1.1.0/license_extension.json new file: config/schemas/1.1.0/scm_extension.json renamed: config/schemas/dataset_extension.json -> config/schemas/1.2.0/dataset_extension.json renamed: config/schemas/fhir_extension.json -> config/schemas/1.2.0/fhir_extension.json renamed: config/schemas/galaxy_extension.json -> config/schemas/1.2.0/galaxy_extension.json renamed: config/schemas/license_extension.json -> config/schemas/1.2.0/license_extension.json renamed: config/schemas/scm_extension.json -> config/schemas/1.2.0/scm_extension.json renamed: config/schemas/2791object.json -> config/schemas/2791/2791object.json renamed: config/schemas/description_domain.json -> config/schemas/2791/description_domain.json renamed: config/schemas/error_domain.json -> config/schemas/2791/error_domain.json renamed: config/schemas/execution_domain.json -> config/schemas/2791/execution_domain.json renamed: config/schemas/io_domain.json -> config/schemas/2791/io_domain.json renamed: config/schemas/parametric_domain.json -> config/schemas/2791/parametric_domain.json renamed: config/schemas/provenance_domain.json -> config/schemas/2791/provenance_domain.json renamed: config/schemas/usability_domain.json -> config/schemas/2791/usability_domain.json modified: config/settings.py modified: requirements.txt
Changes to be committed: modified: Dockerfile modified: docker-compose.yml modified: docs/deployment/dockerDeployment.md new file: entrypoint.sh
Changes to be committed: modified: biocompute/apis.py
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GitGuardian id | GitGuardian status | Secret | Commit | Filename | |
---|---|---|---|---|---|
4444553 | Triggered | Company Email Password | efebfbe | docker-compose.yml | View secret |
4444553 | Triggered | Company Email Password | efebfbe | Dockerfile | View secret |
11839907 | Triggered | Django Secret Key | 5c5c1f7 | config/settings.py | View secret |
🛠 Guidelines to remediate hardcoded secrets
- Understand the implications of revoking this secret by investigating where it is used in your code.
- Replace and store your secrets safely. Learn here the best practices.
- Revoke and rotate these secrets.
- If possible, rewrite git history. Rewriting git history is not a trivial act. You might completely break other contributing developers' workflow and you risk accidentally deleting legitimate data.
To avoid such incidents in the future consider
- following these best practices for managing and storing secrets including API keys and other credentials
- install secret detection on pre-commit to catch secret before it leaves your machine and ease remediation.
🦉 GitGuardian detects secrets in your source code to help developers and security teams secure the modern development process. You are seeing this because you or someone else with access to this repository has authorized GitGuardian to scan your pull request.
* BCO scoring changes * Add New Production Deployment md Changes to be committed: deleted: docs/bco_scores.json modified: docs/deployment/productionDeployment.md new file: docs/newProductionInstance.md * Update config.md * Add API endpoint for basic comaprison Changes to be committed: modified: biocompute/apis.py modified: biocompute/urls.py modified: requirements.txt * Fix Django CI issue (#340) biocompute-objects/portal_userdb#380 Changes to be committed: modified: .github/workflows/django.yml modified: biocompute/apis.py modified: biocompute/models.py modified: config/settings.py modified: config/urls.py * Update to BcoValidator.load_schema (#341) Updated the function to check locally for the most used schemas. Improves testing and speed in BCO validation. Changes to be committed: modified: biocompute/services.py renamed: config/IEEE/2791object.json -> config/schemas/2791object.json new file: config/schemas/dataset_extension.json renamed: config/IEEE/description_domain.json -> config/schemas/description_domain.json renamed: config/IEEE/error_domain.json -> config/schemas/error_domain.json renamed: config/IEEE/execution_domain.json -> config/schemas/execution_domain.json new file: config/schemas/fhir_extension.json new file: config/schemas/galaxy_extension.json renamed: config/IEEE/io_domain.json -> config/schemas/io_domain.json new file: config/schemas/license_extension.json renamed: config/IEEE/parametric_domain.json -> config/schemas/parametric_domain.json renamed: config/IEEE/provenance_domain.json -> config/schemas/provenance_domain.json new file: config/schemas/scm_extension.json renamed: config/IEEE/usability_domain.json -> config/schemas/usability_domain.json * Add additional schema files and reorganize Changes to be committed: modified: biocompute/services.py new file: config/schemas/1.1.0/dataset_extension.json new file: config/schemas/1.1.0/fhir_extension.json new file: config/schemas/1.1.0/galaxy_extension.json new file: config/schemas/1.1.0/license_extension.json new file: config/schemas/1.1.0/scm_extension.json renamed: config/schemas/dataset_extension.json -> config/schemas/1.2.0/dataset_extension.json renamed: config/schemas/fhir_extension.json -> config/schemas/1.2.0/fhir_extension.json renamed: config/schemas/galaxy_extension.json -> config/schemas/1.2.0/galaxy_extension.json renamed: config/schemas/license_extension.json -> config/schemas/1.2.0/license_extension.json renamed: config/schemas/scm_extension.json -> config/schemas/1.2.0/scm_extension.json renamed: config/schemas/2791object.json -> config/schemas/2791/2791object.json renamed: config/schemas/description_domain.json -> config/schemas/2791/description_domain.json renamed: config/schemas/error_domain.json -> config/schemas/2791/error_domain.json renamed: config/schemas/execution_domain.json -> config/schemas/2791/execution_domain.json renamed: config/schemas/io_domain.json -> config/schemas/2791/io_domain.json renamed: config/schemas/parametric_domain.json -> config/schemas/2791/parametric_domain.json renamed: config/schemas/provenance_domain.json -> config/schemas/2791/provenance_domain.json renamed: config/schemas/usability_domain.json -> config/schemas/2791/usability_domain.json modified: config/settings.py modified: requirements.txt * Add instructions for Docker deployment Changes to be committed: modified: Dockerfile modified: docker-compose.yml modified: docs/deployment/dockerDeployment.md new file: entrypoint.sh * Update comparison API (#344) Changes to be committed: modified: biocompute/apis.py --------- Co-authored-by: Kiran Sen <[email protected]> Co-authored-by: Kiran Sen <[email protected]>
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