Update to BcoValidator.load_schema #341
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Updated the function to check locally for the most used schemas. Improves testing and speed in BCO validation. Changes to be committed: modified: biocompute/services.py renamed: config/IEEE/2791object.json -> config/schemas/2791object.json new file: config/schemas/dataset_extension.json renamed: config/IEEE/description_domain.json -> config/schemas/description_domain.json renamed: config/IEEE/error_domain.json -> config/schemas/error_domain.json renamed: config/IEEE/execution_domain.json -> config/schemas/execution_domain.json new file: config/schemas/fhir_extension.json new file: config/schemas/galaxy_extension.json renamed: config/IEEE/io_domain.json -> config/schemas/io_domain.json new file: config/schemas/license_extension.json renamed: config/IEEE/parametric_domain.json -> config/schemas/parametric_domain.json renamed: config/IEEE/provenance_domain.json -> config/schemas/provenance_domain.json new file: config/schemas/scm_extension.json renamed: config/IEEE/usability_domain.json -> config/schemas/usability_domain.json
HadleyKing
added a commit
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Aug 9, 2024
* BCO scoring changes * Add New Production Deployment md Changes to be committed: deleted: docs/bco_scores.json modified: docs/deployment/productionDeployment.md new file: docs/newProductionInstance.md * Update config.md * Add API endpoint for basic comaprison Changes to be committed: modified: biocompute/apis.py modified: biocompute/urls.py modified: requirements.txt * Fix Django CI issue (#340) biocompute-objects/portal_userdb#380 Changes to be committed: modified: .github/workflows/django.yml modified: biocompute/apis.py modified: biocompute/models.py modified: config/settings.py modified: config/urls.py * Update to BcoValidator.load_schema (#341) Updated the function to check locally for the most used schemas. Improves testing and speed in BCO validation. Changes to be committed: modified: biocompute/services.py renamed: config/IEEE/2791object.json -> config/schemas/2791object.json new file: config/schemas/dataset_extension.json renamed: config/IEEE/description_domain.json -> config/schemas/description_domain.json renamed: config/IEEE/error_domain.json -> config/schemas/error_domain.json renamed: config/IEEE/execution_domain.json -> config/schemas/execution_domain.json new file: config/schemas/fhir_extension.json new file: config/schemas/galaxy_extension.json renamed: config/IEEE/io_domain.json -> config/schemas/io_domain.json new file: config/schemas/license_extension.json renamed: config/IEEE/parametric_domain.json -> config/schemas/parametric_domain.json renamed: config/IEEE/provenance_domain.json -> config/schemas/provenance_domain.json new file: config/schemas/scm_extension.json renamed: config/IEEE/usability_domain.json -> config/schemas/usability_domain.json * Add additional schema files and reorganize Changes to be committed: modified: biocompute/services.py new file: config/schemas/1.1.0/dataset_extension.json new file: config/schemas/1.1.0/fhir_extension.json new file: config/schemas/1.1.0/galaxy_extension.json new file: config/schemas/1.1.0/license_extension.json new file: config/schemas/1.1.0/scm_extension.json renamed: config/schemas/dataset_extension.json -> config/schemas/1.2.0/dataset_extension.json renamed: config/schemas/fhir_extension.json -> config/schemas/1.2.0/fhir_extension.json renamed: config/schemas/galaxy_extension.json -> config/schemas/1.2.0/galaxy_extension.json renamed: config/schemas/license_extension.json -> config/schemas/1.2.0/license_extension.json renamed: config/schemas/scm_extension.json -> config/schemas/1.2.0/scm_extension.json renamed: config/schemas/2791object.json -> config/schemas/2791/2791object.json renamed: config/schemas/description_domain.json -> config/schemas/2791/description_domain.json renamed: config/schemas/error_domain.json -> config/schemas/2791/error_domain.json renamed: config/schemas/execution_domain.json -> config/schemas/2791/execution_domain.json renamed: config/schemas/io_domain.json -> config/schemas/2791/io_domain.json renamed: config/schemas/parametric_domain.json -> config/schemas/2791/parametric_domain.json renamed: config/schemas/provenance_domain.json -> config/schemas/2791/provenance_domain.json renamed: config/schemas/usability_domain.json -> config/schemas/2791/usability_domain.json modified: config/settings.py modified: requirements.txt * Add instructions for Docker deployment Changes to be committed: modified: Dockerfile modified: docker-compose.yml modified: docs/deployment/dockerDeployment.md new file: entrypoint.sh --------- Co-authored-by: Kiran Sen <[email protected]> Co-authored-by: Kiran Sen <[email protected]>
HadleyKing
added a commit
that referenced
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Aug 22, 2024
* BCO scoring changes * Add New Production Deployment md Changes to be committed: deleted: docs/bco_scores.json modified: docs/deployment/productionDeployment.md new file: docs/newProductionInstance.md * Update config.md * Add API endpoint for basic comaprison Changes to be committed: modified: biocompute/apis.py modified: biocompute/urls.py modified: requirements.txt * Fix Django CI issue (#340) biocompute-objects/portal_userdb#380 Changes to be committed: modified: .github/workflows/django.yml modified: biocompute/apis.py modified: biocompute/models.py modified: config/settings.py modified: config/urls.py * Update to BcoValidator.load_schema (#341) Updated the function to check locally for the most used schemas. Improves testing and speed in BCO validation. Changes to be committed: modified: biocompute/services.py renamed: config/IEEE/2791object.json -> config/schemas/2791object.json new file: config/schemas/dataset_extension.json renamed: config/IEEE/description_domain.json -> config/schemas/description_domain.json renamed: config/IEEE/error_domain.json -> config/schemas/error_domain.json renamed: config/IEEE/execution_domain.json -> config/schemas/execution_domain.json new file: config/schemas/fhir_extension.json new file: config/schemas/galaxy_extension.json renamed: config/IEEE/io_domain.json -> config/schemas/io_domain.json new file: config/schemas/license_extension.json renamed: config/IEEE/parametric_domain.json -> config/schemas/parametric_domain.json renamed: config/IEEE/provenance_domain.json -> config/schemas/provenance_domain.json new file: config/schemas/scm_extension.json renamed: config/IEEE/usability_domain.json -> config/schemas/usability_domain.json * Add additional schema files and reorganize Changes to be committed: modified: biocompute/services.py new file: config/schemas/1.1.0/dataset_extension.json new file: config/schemas/1.1.0/fhir_extension.json new file: config/schemas/1.1.0/galaxy_extension.json new file: config/schemas/1.1.0/license_extension.json new file: config/schemas/1.1.0/scm_extension.json renamed: config/schemas/dataset_extension.json -> config/schemas/1.2.0/dataset_extension.json renamed: config/schemas/fhir_extension.json -> config/schemas/1.2.0/fhir_extension.json renamed: config/schemas/galaxy_extension.json -> config/schemas/1.2.0/galaxy_extension.json renamed: config/schemas/license_extension.json -> config/schemas/1.2.0/license_extension.json renamed: config/schemas/scm_extension.json -> config/schemas/1.2.0/scm_extension.json renamed: config/schemas/2791object.json -> config/schemas/2791/2791object.json renamed: config/schemas/description_domain.json -> config/schemas/2791/description_domain.json renamed: config/schemas/error_domain.json -> config/schemas/2791/error_domain.json renamed: config/schemas/execution_domain.json -> config/schemas/2791/execution_domain.json renamed: config/schemas/io_domain.json -> config/schemas/2791/io_domain.json renamed: config/schemas/parametric_domain.json -> config/schemas/2791/parametric_domain.json renamed: config/schemas/provenance_domain.json -> config/schemas/2791/provenance_domain.json renamed: config/schemas/usability_domain.json -> config/schemas/2791/usability_domain.json modified: config/settings.py modified: requirements.txt * Add instructions for Docker deployment Changes to be committed: modified: Dockerfile modified: docker-compose.yml modified: docs/deployment/dockerDeployment.md new file: entrypoint.sh * Update comparison API (#344) Changes to be committed: modified: biocompute/apis.py --------- Co-authored-by: Kiran Sen <[email protected]> Co-authored-by: Kiran Sen <[email protected]>
Merged
HadleyKing
added a commit
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Aug 22, 2024
* BCO scoring changes * Add New Production Deployment md Changes to be committed: deleted: docs/bco_scores.json modified: docs/deployment/productionDeployment.md new file: docs/newProductionInstance.md * Update config.md * Add API endpoint for basic comaprison Changes to be committed: modified: biocompute/apis.py modified: biocompute/urls.py modified: requirements.txt * Fix Django CI issue (#340) biocompute-objects/portal_userdb#380 Changes to be committed: modified: .github/workflows/django.yml modified: biocompute/apis.py modified: biocompute/models.py modified: config/settings.py modified: config/urls.py * Update to BcoValidator.load_schema (#341) Updated the function to check locally for the most used schemas. Improves testing and speed in BCO validation. Changes to be committed: modified: biocompute/services.py renamed: config/IEEE/2791object.json -> config/schemas/2791object.json new file: config/schemas/dataset_extension.json renamed: config/IEEE/description_domain.json -> config/schemas/description_domain.json renamed: config/IEEE/error_domain.json -> config/schemas/error_domain.json renamed: config/IEEE/execution_domain.json -> config/schemas/execution_domain.json new file: config/schemas/fhir_extension.json new file: config/schemas/galaxy_extension.json renamed: config/IEEE/io_domain.json -> config/schemas/io_domain.json new file: config/schemas/license_extension.json renamed: config/IEEE/parametric_domain.json -> config/schemas/parametric_domain.json renamed: config/IEEE/provenance_domain.json -> config/schemas/provenance_domain.json new file: config/schemas/scm_extension.json renamed: config/IEEE/usability_domain.json -> config/schemas/usability_domain.json * Add additional schema files and reorganize Changes to be committed: modified: biocompute/services.py new file: config/schemas/1.1.0/dataset_extension.json new file: config/schemas/1.1.0/fhir_extension.json new file: config/schemas/1.1.0/galaxy_extension.json new file: config/schemas/1.1.0/license_extension.json new file: config/schemas/1.1.0/scm_extension.json renamed: config/schemas/dataset_extension.json -> config/schemas/1.2.0/dataset_extension.json renamed: config/schemas/fhir_extension.json -> config/schemas/1.2.0/fhir_extension.json renamed: config/schemas/galaxy_extension.json -> config/schemas/1.2.0/galaxy_extension.json renamed: config/schemas/license_extension.json -> config/schemas/1.2.0/license_extension.json renamed: config/schemas/scm_extension.json -> config/schemas/1.2.0/scm_extension.json renamed: config/schemas/2791object.json -> config/schemas/2791/2791object.json renamed: config/schemas/description_domain.json -> config/schemas/2791/description_domain.json renamed: config/schemas/error_domain.json -> config/schemas/2791/error_domain.json renamed: config/schemas/execution_domain.json -> config/schemas/2791/execution_domain.json renamed: config/schemas/io_domain.json -> config/schemas/2791/io_domain.json renamed: config/schemas/parametric_domain.json -> config/schemas/2791/parametric_domain.json renamed: config/schemas/provenance_domain.json -> config/schemas/2791/provenance_domain.json renamed: config/schemas/usability_domain.json -> config/schemas/2791/usability_domain.json modified: config/settings.py modified: requirements.txt * Add instructions for Docker deployment Changes to be committed: modified: Dockerfile modified: docker-compose.yml modified: docs/deployment/dockerDeployment.md new file: entrypoint.sh * Update comparison API (#344) Changes to be committed: modified: biocompute/apis.py --------- Co-authored-by: Kiran Sen <[email protected]> Co-authored-by: Kiran Sen <[email protected]>
HadleyKing
added a commit
that referenced
this pull request
Aug 30, 2024
* BCO scoring changes * Add New Production Deployment md Changes to be committed: deleted: docs/bco_scores.json modified: docs/deployment/productionDeployment.md new file: docs/newProductionInstance.md * Update config.md * Add API endpoint for basic comaprison Changes to be committed: modified: biocompute/apis.py modified: biocompute/urls.py modified: requirements.txt * Fix Django CI issue (#340) biocompute-objects/portal_userdb#380 Changes to be committed: modified: .github/workflows/django.yml modified: biocompute/apis.py modified: biocompute/models.py modified: config/settings.py modified: config/urls.py * Update to BcoValidator.load_schema (#341) Updated the function to check locally for the most used schemas. Improves testing and speed in BCO validation. Changes to be committed: modified: biocompute/services.py renamed: config/IEEE/2791object.json -> config/schemas/2791object.json new file: config/schemas/dataset_extension.json renamed: config/IEEE/description_domain.json -> config/schemas/description_domain.json renamed: config/IEEE/error_domain.json -> config/schemas/error_domain.json renamed: config/IEEE/execution_domain.json -> config/schemas/execution_domain.json new file: config/schemas/fhir_extension.json new file: config/schemas/galaxy_extension.json renamed: config/IEEE/io_domain.json -> config/schemas/io_domain.json new file: config/schemas/license_extension.json renamed: config/IEEE/parametric_domain.json -> config/schemas/parametric_domain.json renamed: config/IEEE/provenance_domain.json -> config/schemas/provenance_domain.json new file: config/schemas/scm_extension.json renamed: config/IEEE/usability_domain.json -> config/schemas/usability_domain.json * Add additional schema files and reorganize Changes to be committed: modified: biocompute/services.py new file: config/schemas/1.1.0/dataset_extension.json new file: config/schemas/1.1.0/fhir_extension.json new file: config/schemas/1.1.0/galaxy_extension.json new file: config/schemas/1.1.0/license_extension.json new file: config/schemas/1.1.0/scm_extension.json renamed: config/schemas/dataset_extension.json -> config/schemas/1.2.0/dataset_extension.json renamed: config/schemas/fhir_extension.json -> config/schemas/1.2.0/fhir_extension.json renamed: config/schemas/galaxy_extension.json -> config/schemas/1.2.0/galaxy_extension.json renamed: config/schemas/license_extension.json -> config/schemas/1.2.0/license_extension.json renamed: config/schemas/scm_extension.json -> config/schemas/1.2.0/scm_extension.json renamed: config/schemas/2791object.json -> config/schemas/2791/2791object.json renamed: config/schemas/description_domain.json -> config/schemas/2791/description_domain.json renamed: config/schemas/error_domain.json -> config/schemas/2791/error_domain.json renamed: config/schemas/execution_domain.json -> config/schemas/2791/execution_domain.json renamed: config/schemas/io_domain.json -> config/schemas/2791/io_domain.json renamed: config/schemas/parametric_domain.json -> config/schemas/2791/parametric_domain.json renamed: config/schemas/provenance_domain.json -> config/schemas/2791/provenance_domain.json renamed: config/schemas/usability_domain.json -> config/schemas/2791/usability_domain.json modified: config/settings.py modified: requirements.txt * Add instructions for Docker deployment Changes to be committed: modified: Dockerfile modified: docker-compose.yml modified: docs/deployment/dockerDeployment.md new file: entrypoint.sh * Update comparison API (#344) Changes to be committed: modified: biocompute/apis.py * Add API for LDH (#347) #333 Changes to be committed: modified: biocompute/apis.py modified: biocompute/selectors.py modified: biocompute/services.py modified: biocompute/urls.py --------- Co-authored-by: Kiran Sen <[email protected]> Co-authored-by: Kiran Sen <[email protected]>
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Updated the function to check locally for the most used schemas. Improves testing and speed in BCO validation.
Changes to be committed:
modified: biocompute/services.py
renamed: config/IEEE/2791object.json -> config/schemas/2791object.json
new file: config/schemas/dataset_extension.json
renamed: config/IEEE/description_domain.json -> config/schemas/description_domain.json
renamed: config/IEEE/error_domain.json -> config/schemas/error_domain.json
renamed: config/IEEE/execution_domain.json -> config/schemas/execution_domain.json
new file: config/schemas/fhir_extension.json
new file: config/schemas/galaxy_extension.json
renamed: config/IEEE/io_domain.json -> config/schemas/io_domain.json
new file: config/schemas/license_extension.json
renamed: config/IEEE/parametric_domain.json -> config/schemas/parametric_domain.json
renamed: config/IEEE/provenance_domain.json -> config/schemas/provenance_domain.json
new file: config/schemas/scm_extension.json
renamed: config/IEEE/usability_domain.json -> config/schemas/usability_domain.json