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Model refactor (#280) #322

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wants to merge 1 commit into from
Closed

Model refactor (#280) #322

wants to merge 1 commit into from

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HadleyKing
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  • Change bcodb directory to config directory

Changes to be committed:
modified: .gitignore
deleted: bcodb/settings.py
renamed: bcodb/init.py -> config/init.py
renamed: bcodb/asgi.py -> config/asgi.py
renamed: bcodb/fixtures/local_data.json -> config/fixtures/local_data.json
renamed: bcodb/fixtures/test_portal.json -> config/fixtures/test_portal.json
renamed: bcodb/urls.py -> config/urls.py
renamed: bcodb/wsgi.py -> config/wsgi.py
modified: manage.py

  • Create NewUser model and remove new_user model

changed model behind /api/accounts/new/
Changes to be committed:
modified: api/admin.py
new file: api/migrations/0006_delete_new_users.py
modified: api/models.py
deleted: api/scripts/method_specific/POST_api_accounts_new.py
modified: api/urls.py
modified: api/views.py
modified: authentication/admin.py
modified: authentication/apis.py
new file: authentication/migrations/0002_newuser.py
modified: authentication/models.py
modified: authentication/selectors.py
modified: authentication/services.py
modified: tests/fixtures/test_data.json
modified: tests/test_views/test_api_account_activate.py
modified: tests/test_views/test_api_account_new.py

  • Add example values to test account request

Changes to be committed:
modified: authentication/apis.py
new file: docs/refactor.md

  • Account activation has been enabled.

On branch account_authorization
Changes to be committed:
modified: api/urls.py
modified: api/views.py
modified: authentication/apis.py
modified: authentication/selectors.py
modified: authentication/services.py
modified: authentication/urls.py

On branch account_authorization
Changes to be committed:
modified: api/urls.py
modified: api/views.py
modified: authentication/apis.py
modified: authentication/selectors.py
modified: authentication/services.py
modified: authentication/urls.py

  • get_new_user

  • Remove API app Changes to be committed:
    deleted: api/init.py
    deleted: api/admin.py
    deleted: api/apps.py
    deleted: api/fixtures/bootstrap.json
    deleted: api/fixtures/metafixtures
    deleted: api/fixtures/metafixtures.json
    deleted: api/keys.sh
    deleted: api/migrations/0001_initial.py
    deleted: api/migrations/0002_auto_20220124_2356.py
    deleted: api/migrations/0003_rename_meta_table_prefix_table.py
    deleted: api/migrations/0004_rename_group_info_groupinfo.py
    deleted: api/migrations/0005_rename_prefixes_prefix.py
    deleted: api/migrations/0006_delete_new_users.py
    deleted: api/migrations/init.py
    deleted: api/model/init.py
    deleted: api/model/groups.py
    deleted: api/model/prefix.py
    deleted: api/models.py
    deleted: api/permissions.py
    deleted: api/rdb.sh
    deleted: api/request_definitions/GET.schema
    deleted: api/request_definitions/POST.schema
    deleted: api/request_definitions/templates/DELETE_delete_object_by_id.schema
    deleted: api/request_definitions/templates/GET_activate_account.schema
    deleted: api/request_definitions/templates/GET_get_object_by_id.schema
    deleted: api/request_definitions/templates/GET_retrieve_available_schema.schema
    deleted: api/request_definitions/templates/POST_convert_existing_object_between_schemas.schema
    deleted: api/request_definitions/templates/POST_convert_payload_to_schema.schema
    deleted: api/request_definitions/templates/POST_new_account.schema
    deleted: api/request_definitions/templates/POST_object_listing_by_token.schema
    deleted: api/request_definitions/templates/POST_objects_draft.schema
    deleted: api/request_definitions/templates/POST_objects_publish.schema
    deleted: api/request_definitions/templates/POST_read_object.schema
    deleted: api/request_definitions/templates/POST_validate_payload_against_schema.schema
    deleted: api/scripts/init.py
    deleted: api/scripts/method_specific/GET_draft_object_by_id.py
    deleted: api/scripts/method_specific/GET_published_object_by_id.py
    deleted: api/scripts/method_specific/GET_published_object_by_id_with_version.py
    deleted: api/scripts/method_specific/GET_retrieve_available_schema.py
    deleted: api/scripts/method_specific/POST_api_objects_drafts_create.py
    deleted: api/scripts/method_specific/POST_api_objects_drafts_delete.py
    deleted: api/scripts/method_specific/POST_api_objects_drafts_modify.py
    deleted: api/scripts/method_specific/POST_api_objects_drafts_permissions.py
    deleted: api/scripts/method_specific/POST_api_objects_drafts_permissions_set.py
    deleted: api/scripts/method_specific/POST_api_objects_drafts_publish.py
    deleted: api/scripts/method_specific/POST_api_objects_drafts_read.py
    deleted: api/scripts/method_specific/POST_api_objects_drafts_token.py
    deleted: api/scripts/method_specific/POST_api_objects_publish.py
    deleted: api/scripts/method_specific/POST_api_objects_published.py
    deleted: api/scripts/method_specific/POST_api_objects_search.py
    deleted: api/scripts/method_specific/POST_api_objects_token.py
    deleted: api/scripts/method_specific/POST_validate_payload_against_schema.py
    deleted: api/scripts/method_specific/init.py
    deleted: api/scripts/utilities/DbUtils.py
    deleted: api/scripts/utilities/FileUtils.py
    deleted: api/scripts/utilities/JsonUtils.py
    deleted: api/scripts/utilities/RequestUtils.py
    deleted: api/scripts/utilities/ResponseUtils.py
    deleted: api/scripts/utilities/SettingsUtils.py
    deleted: api/scripts/utilities/UserUtils.py
    deleted: api/scripts/utilities/init.py
    deleted: api/serializers.py
    deleted: api/signals.py
    deleted: api/templates/api/account_activation_message.html
    deleted: api/urls.py
    deleted: api/validation_definitions/IEEE/2791object.json
    deleted: api/validation_definitions/IEEE/description_domain.json
    deleted: api/validation_definitions/IEEE/error_domain.json
    deleted: api/validation_definitions/IEEE/execution_domain.json
    deleted: api/validation_definitions/IEEE/io_domain.json
    deleted: api/validation_definitions/IEEE/parametric_domain.json
    deleted: api/validation_definitions/IEEE/provenance_domain.json
    deleted: api/validation_definitions/IEEE/usability_domain.json
    deleted: api/validation_definitions/IEEE_sub/IEEE2791-2020.schema
    deleted: api/validation_definitions/IEEE_sub/domains/description_domain.json
    deleted: api/validation_definitions/IEEE_sub/domains/error_domain.json
    deleted: api/validation_definitions/IEEE_sub/domains/execution_domain.json
    deleted: api/validation_definitions/IEEE_sub/domains/io_domain.json
    deleted: api/validation_definitions/IEEE_sub/domains/parametric_domain.json
    deleted: api/validation_definitions/IEEE_sub/domains/provenance_domain.json
    deleted: api/validation_definitions/IEEE_sub/domains/usability_domain.json
    deleted: api/validation_definitions/uri_external
    deleted: api/views.py
    new file: config/settings.py
    modified: config/urls.py

Changes not staged for commit:
modified: authentication/apis.py
modified: authentication/migrations/0001_initial.py
deleted: authentication/migrations/0002_newuser.py
modified: authentication/services.py
modified: docs/refactor.md
modified: search/selectors.py
modified: tests/fixtures/test_data.json
deleted: tests/test_database.py
deleted: tests/test_fixtures.py
deleted: tests/test_models
modified: tests/test_views/test_api_account_activate.py
deleted: tests/test_views/test_api_accounts_describe.py
modified: tests/test_views/test_api_auth_add.py
modified: tests/test_views/test_api_auth_reset_token.py
deleted: tests/test_views/test_api_groups_group_info.py
deleted: tests/test_views/test_api_groups_modify.py
deleted: tests/test_views/test_api_objects.py
deleted: tests/test_views/test_api_objects_drafts_create.py
deleted: tests/test_views/test_api_objects_drafts_modify.py
deleted: tests/test_views/test_api_objects_drafts_publish.py
deleted: tests/test_views/test_api_objects_search.py
deleted: tests/test_views/test_api_objects_validate.py
deleted: tests/test_views/test_api_prefixes_create.py
deleted: tests/test_views/test_api_prefixes_token.py
deleted: tests/test_views/test_get_object_id_draft.py
deleted: tests/test_views/test_get_objectid.py
deleted: tests/test_views/test_published_object_by_id.py
modified: token.json

  • Framework for BioCompute model

Changes to be committed:
new file: biocompute/init.py
new file: biocompute/admin.py
new file: biocompute/apis.py
new file: biocompute/migrations/init.py
new file: biocompute/models.py
new file: biocompute/selectors.py
new file: biocompute/services.py
new file: biocompute/urls.py

  • Added files for Prefix model

Changes to be committed:
new file: prefix/init.py
new file: prefix/admin.py
new file: prefix/apis.py
new file: prefix/apps.py
new file: prefix/migrations/init.py
new file: prefix/models.py
new file: prefix/selectors.py
new file: prefix/services.py
new file: prefix/urls.py

  • Tests for authentication

Changes to be committed:
modified: .gitignore
modified: authentication/apis.py
modified: authentication/migrations/0001_initial.py
deleted: authentication/migrations/0002_newuser.py
modified: authentication/services.py
new file: biocompute/migrations/0001_initial.py
modified: docs/refactor.md
new file: prefix/migrations/0001_initial.py
modified: search/selectors.py
new file: test.json
new file: tests/fixtures/old_test_data.json
modified: tests/fixtures/test_data.json
deleted: tests/test_database.py
deleted: tests/test_fixtures.py
deleted: tests/test_models
modified: tests/test_views/test_api_account_activate.py
renamed: tests/test_views/test_api_accounts_describe.py -> tests/test_views/test_api_account_describe.py
modified: tests/test_views/test_api_auth_add.py
modified: tests/test_views/test_api_auth_reset_token.py
deleted: tests/test_views/test_api_groups_group_info.py
deleted: tests/test_views/test_api_groups_modify.py
deleted: tests/test_views/test_api_objects.py
deleted: tests/test_views/test_api_objects_drafts_create.py
deleted: tests/test_views/test_api_objects_drafts_modify.py
deleted: tests/test_views/test_api_objects_drafts_publish.py
deleted: tests/test_views/test_api_objects_search.py
deleted: tests/test_views/test_api_objects_validate.py
deleted: tests/test_views/test_api_prefixes_create.py
deleted: tests/test_views/test_api_prefixes_token.py
deleted: tests/test_views/test_get_object_id_draft.py
deleted: tests/test_views/test_get_objectid.py
deleted: tests/test_views/test_published_object_by_id.py
modified: token.json

  • Swagger move (Swagger move #283)

  • Remove API app Changes to be committed:
    deleted: api/init.py
    deleted: api/admin.py
    deleted: api/apps.py
    deleted: api/fixtures/bootstrap.json
    deleted: api/fixtures/metafixtures
    deleted: api/fixtures/metafixtures.json
    deleted: api/keys.sh
    deleted: api/migrations/0001_initial.py
    deleted: api/migrations/0002_auto_20220124_2356.py
    deleted: api/migrations/0003_rename_meta_table_prefix_table.py
    deleted: api/migrations/0004_rename_group_info_groupinfo.py
    deleted: api/migrations/0005_rename_prefixes_prefix.py
    deleted: api/migrations/0006_delete_new_users.py
    deleted: api/migrations/init.py
    deleted: api/model/init.py
    deleted: api/model/groups.py
    deleted: api/model/prefix.py
    deleted: api/models.py
    deleted: api/permissions.py
    deleted: api/rdb.sh
    deleted: api/request_definitions/GET.schema
    deleted: api/request_definitions/POST.schema
    deleted: api/request_definitions/templates/DELETE_delete_object_by_id.schema
    deleted: api/request_definitions/templates/GET_activate_account.schema
    deleted: api/request_definitions/templates/GET_get_object_by_id.schema
    deleted: api/request_definitions/templates/GET_retrieve_available_schema.schema
    deleted: api/request_definitions/templates/POST_convert_existing_object_between_schemas.schema
    deleted: api/request_definitions/templates/POST_convert_payload_to_schema.schema
    deleted: api/request_definitions/templates/POST_new_account.schema
    deleted: api/request_definitions/templates/POST_object_listing_by_token.schema
    deleted: api/request_definitions/templates/POST_objects_draft.schema
    deleted: api/request_definitions/templates/POST_objects_publish.schema
    deleted: api/request_definitions/templates/POST_read_object.schema
    deleted: api/request_definitions/templates/POST_validate_payload_against_schema.schema
    deleted: api/scripts/init.py
    deleted: api/scripts/method_specific/GET_draft_object_by_id.py
    deleted: api/scripts/method_specific/GET_published_object_by_id.py
    deleted: api/scripts/method_specific/GET_published_object_by_id_with_version.py
    deleted: api/scripts/method_specific/GET_retrieve_available_schema.py
    deleted: api/scripts/method_specific/POST_api_objects_drafts_create.py
    deleted: api/scripts/method_specific/POST_api_objects_drafts_delete.py
    deleted: api/scripts/method_specific/POST_api_objects_drafts_modify.py
    deleted: api/scripts/method_specific/POST_api_objects_drafts_permissions.py
    deleted: api/scripts/method_specific/POST_api_objects_drafts_permissions_set.py
    deleted: api/scripts/method_specific/POST_api_objects_drafts_publish.py
    deleted: api/scripts/method_specific/POST_api_objects_drafts_read.py
    deleted: api/scripts/method_specific/POST_api_objects_drafts_token.py
    deleted: api/scripts/method_specific/POST_api_objects_publish.py
    deleted: api/scripts/method_specific/POST_api_objects_published.py
    deleted: api/scripts/method_specific/POST_api_objects_search.py
    deleted: api/scripts/method_specific/POST_api_objects_token.py
    deleted: api/scripts/method_specific/POST_validate_payload_against_schema.py
    deleted: api/scripts/method_specific/init.py
    deleted: api/scripts/utilities/DbUtils.py
    deleted: api/scripts/utilities/FileUtils.py
    deleted: api/scripts/utilities/JsonUtils.py
    deleted: api/scripts/utilities/RequestUtils.py
    deleted: api/scripts/utilities/ResponseUtils.py
    deleted: api/scripts/utilities/SettingsUtils.py
    deleted: api/scripts/utilities/UserUtils.py
    deleted: api/scripts/utilities/init.py
    deleted: api/serializers.py
    deleted: api/signals.py
    deleted: api/templates/api/account_activation_message.html
    deleted: api/urls.py
    deleted: api/validation_definitions/IEEE/2791object.json
    deleted: api/validation_definitions/IEEE/description_domain.json
    deleted: api/validation_definitions/IEEE/error_domain.json
    deleted: api/validation_definitions/IEEE/execution_domain.json
    deleted: api/validation_definitions/IEEE/io_domain.json
    deleted: api/validation_definitions/IEEE/parametric_domain.json
    deleted: api/validation_definitions/IEEE/provenance_domain.json
    deleted: api/validation_definitions/IEEE/usability_domain.json
    deleted: api/validation_definitions/IEEE_sub/IEEE2791-2020.schema
    deleted: api/validation_definitions/IEEE_sub/domains/description_domain.json
    deleted: api/validation_definitions/IEEE_sub/domains/error_domain.json
    deleted: api/validation_definitions/IEEE_sub/domains/execution_domain.json
    deleted: api/validation_definitions/IEEE_sub/domains/io_domain.json
    deleted: api/validation_definitions/IEEE_sub/domains/parametric_domain.json
    deleted: api/validation_definitions/IEEE_sub/domains/provenance_domain.json
    deleted: api/validation_definitions/IEEE_sub/domains/usability_domain.json
    deleted: api/validation_definitions/uri_external
    deleted: api/views.py
    new file: config/settings.py
    modified: config/urls.py

Changes not staged for commit:
modified: authentication/apis.py
modified: authentication/migrations/0001_initial.py
deleted: authentication/migrations/0002_newuser.py
modified: authentication/services.py
modified: docs/refactor.md
modified: search/selectors.py
modified: tests/fixtures/test_data.json
deleted: tests/test_database.py
deleted: tests/test_fixtures.py
deleted: tests/test_models
modified: tests/test_views/test_api_account_activate.py
deleted: tests/test_views/test_api_accounts_describe.py
modified: tests/test_views/test_api_auth_add.py
modified: tests/test_views/test_api_auth_reset_token.py
deleted: tests/test_views/test_api_groups_group_info.py
deleted: tests/test_views/test_api_groups_modify.py
deleted: tests/test_views/test_api_objects.py
deleted: tests/test_views/test_api_objects_drafts_create.py
deleted: tests/test_views/test_api_objects_drafts_modify.py
deleted: tests/test_views/test_api_objects_drafts_publish.py
deleted: tests/test_views/test_api_objects_search.py
deleted: tests/test_views/test_api_objects_validate.py
deleted: tests/test_views/test_api_prefixes_create.py
deleted: tests/test_views/test_api_prefixes_token.py
deleted: tests/test_views/test_get_object_id_draft.py
deleted: tests/test_views/test_get_objectid.py
deleted: tests/test_views/test_published_object_by_id.py
modified: token.json

  • Framework for BioCompute model

Changes to be committed:
new file: biocompute/init.py
new file: biocompute/admin.py
new file: biocompute/apis.py
new file: biocompute/migrations/init.py
new file: biocompute/models.py
new file: biocompute/selectors.py
new file: biocompute/services.py
new file: biocompute/urls.py

  • Added files for Prefix model

Changes to be committed:
new file: prefix/init.py
new file: prefix/admin.py
new file: prefix/apis.py
new file: prefix/apps.py
new file: prefix/migrations/init.py
new file: prefix/models.py
new file: prefix/selectors.py
new file: prefix/services.py
new file: prefix/urls.py

  • Tests for authentication

Changes to be committed:
modified: .gitignore
modified: authentication/apis.py
modified: authentication/migrations/0001_initial.py
deleted: authentication/migrations/0002_newuser.py
modified: authentication/services.py
new file: biocompute/migrations/0001_initial.py
modified: docs/refactor.md
new file: prefix/migrations/0001_initial.py
modified: search/selectors.py
new file: test.json
new file: tests/fixtures/old_test_data.json
modified: tests/fixtures/test_data.json
deleted: tests/test_database.py
deleted: tests/test_fixtures.py
deleted: tests/test_models
modified: tests/test_views/test_api_account_activate.py
renamed: tests/test_views/test_api_accounts_describe.py -> tests/test_views/test_api_account_describe.py
modified: tests/test_views/test_api_auth_add.py
modified: tests/test_views/test_api_auth_reset_token.py
deleted: tests/test_views/test_api_groups_group_info.py
deleted: tests/test_views/test_api_groups_modify.py
deleted: tests/test_views/test_api_objects.py
deleted: tests/test_views/test_api_objects_drafts_create.py
deleted: tests/test_views/test_api_objects_drafts_modify.py
deleted: tests/test_views/test_api_objects_drafts_publish.py
deleted: tests/test_views/test_api_objects_search.py
deleted: tests/test_views/test_api_objects_validate.py
deleted: tests/test_views/test_api_prefixes_create.py
deleted: tests/test_views/test_api_prefixes_token.py
deleted: tests/test_views/test_get_object_id_draft.py
deleted: tests/test_views/test_get_objectid.py
deleted: tests/test_views/test_published_object_by_id.py
modified: token.json

  • Move Swagger files and implement BCO draft create

Changes to be committed:
modified: biocompute/apis.py
modified: biocompute/models.py
modified: biocompute/services.py
modified: biocompute/urls.py
new file: config/services.py
modified: config/urls.py
modified: docs/refactor.md
modified: prefix/urls.py
new file: tests/fixtures/example_bco.py
new file: tests/test_views/test_api_objects_drafts_create.py

  • Doc fix in Bco.models Changes to be committed:
    modified: biocompute/models.py

  • Biocompute model (Biocompute model #284)

  • Remove API app Changes to be committed:
    deleted: api/init.py
    deleted: api/admin.py
    deleted: api/apps.py
    deleted: api/fixtures/bootstrap.json
    deleted: api/fixtures/metafixtures
    deleted: api/fixtures/metafixtures.json
    deleted: api/keys.sh
    deleted: api/migrations/0001_initial.py
    deleted: api/migrations/0002_auto_20220124_2356.py
    deleted: api/migrations/0003_rename_meta_table_prefix_table.py
    deleted: api/migrations/0004_rename_group_info_groupinfo.py
    deleted: api/migrations/0005_rename_prefixes_prefix.py
    deleted: api/migrations/0006_delete_new_users.py
    deleted: api/migrations/init.py
    deleted: api/model/init.py
    deleted: api/model/groups.py
    deleted: api/model/prefix.py
    deleted: api/models.py
    deleted: api/permissions.py
    deleted: api/rdb.sh
    deleted: api/request_definitions/GET.schema
    deleted: api/request_definitions/POST.schema
    deleted: api/request_definitions/templates/DELETE_delete_object_by_id.schema
    deleted: api/request_definitions/templates/GET_activate_account.schema
    deleted: api/request_definitions/templates/GET_get_object_by_id.schema
    deleted: api/request_definitions/templates/GET_retrieve_available_schema.schema
    deleted: api/request_definitions/templates/POST_convert_existing_object_between_schemas.schema
    deleted: api/request_definitions/templates/POST_convert_payload_to_schema.schema
    deleted: api/request_definitions/templates/POST_new_account.schema
    deleted: api/request_definitions/templates/POST_object_listing_by_token.schema
    deleted: api/request_definitions/templates/POST_objects_draft.schema
    deleted: api/request_definitions/templates/POST_objects_publish.schema
    deleted: api/request_definitions/templates/POST_read_object.schema
    deleted: api/request_definitions/templates/POST_validate_payload_against_schema.schema
    deleted: api/scripts/init.py
    deleted: api/scripts/method_specific/GET_draft_object_by_id.py
    deleted: api/scripts/method_specific/GET_published_object_by_id.py
    deleted: api/scripts/method_specific/GET_published_object_by_id_with_version.py
    deleted: api/scripts/method_specific/GET_retrieve_available_schema.py
    deleted: api/scripts/method_specific/POST_api_objects_drafts_create.py
    deleted: api/scripts/method_specific/POST_api_objects_drafts_delete.py
    deleted: api/scripts/method_specific/POST_api_objects_drafts_modify.py
    deleted: api/scripts/method_specific/POST_api_objects_drafts_permissions.py
    deleted: api/scripts/method_specific/POST_api_objects_drafts_permissions_set.py
    deleted: api/scripts/method_specific/POST_api_objects_drafts_publish.py
    deleted: api/scripts/method_specific/POST_api_objects_drafts_read.py
    deleted: api/scripts/method_specific/POST_api_objects_drafts_token.py
    deleted: api/scripts/method_specific/POST_api_objects_publish.py
    deleted: api/scripts/method_specific/POST_api_objects_published.py
    deleted: api/scripts/method_specific/POST_api_objects_search.py
    deleted: api/scripts/method_specific/POST_api_objects_token.py
    deleted: api/scripts/method_specific/POST_validate_payload_against_schema.py
    deleted: api/scripts/method_specific/init.py
    deleted: api/scripts/utilities/DbUtils.py
    deleted: api/scripts/utilities/FileUtils.py
    deleted: api/scripts/utilities/JsonUtils.py
    deleted: api/scripts/utilities/RequestUtils.py
    deleted: api/scripts/utilities/ResponseUtils.py
    deleted: api/scripts/utilities/SettingsUtils.py
    deleted: api/scripts/utilities/UserUtils.py
    deleted: api/scripts/utilities/init.py
    deleted: api/serializers.py
    deleted: api/signals.py
    deleted: api/templates/api/account_activation_message.html
    deleted: api/urls.py
    deleted: api/validation_definitions/IEEE/2791object.json
    deleted: api/validation_definitions/IEEE/description_domain.json
    deleted: api/validation_definitions/IEEE/error_domain.json
    deleted: api/validation_definitions/IEEE/execution_domain.json
    deleted: api/validation_definitions/IEEE/io_domain.json
    deleted: api/validation_definitions/IEEE/parametric_domain.json
    deleted: api/validation_definitions/IEEE/provenance_domain.json
    deleted: api/validation_definitions/IEEE/usability_domain.json
    deleted: api/validation_definitions/IEEE_sub/IEEE2791-2020.schema
    deleted: api/validation_definitions/IEEE_sub/domains/description_domain.json
    deleted: api/validation_definitions/IEEE_sub/domains/error_domain.json
    deleted: api/validation_definitions/IEEE_sub/domains/execution_domain.json
    deleted: api/validation_definitions/IEEE_sub/domains/io_domain.json
    deleted: api/validation_definitions/IEEE_sub/domains/parametric_domain.json
    deleted: api/validation_definitions/IEEE_sub/domains/provenance_domain.json
    deleted: api/validation_definitions/IEEE_sub/domains/usability_domain.json
    deleted: api/validation_definitions/uri_external
    deleted: api/views.py
    new file: config/settings.py
    modified: config/urls.py

Changes not staged for commit:
modified: authentication/apis.py
modified: authentication/migrations/0001_initial.py
deleted: authentication/migrations/0002_newuser.py
modified: authentication/services.py
modified: docs/refactor.md
modified: search/selectors.py
modified: tests/fixtures/test_data.json
deleted: tests/test_database.py
deleted: tests/test_fixtures.py
deleted: tests/test_models
modified: tests/test_views/test_api_account_activate.py
deleted: tests/test_views/test_api_accounts_describe.py
modified: tests/test_views/test_api_auth_add.py
modified: tests/test_views/test_api_auth_reset_token.py
deleted: tests/test_views/test_api_groups_group_info.py
deleted: tests/test_views/test_api_groups_modify.py
deleted: tests/test_views/test_api_objects.py
deleted: tests/test_views/test_api_objects_drafts_create.py
deleted: tests/test_views/test_api_objects_drafts_modify.py
deleted: tests/test_views/test_api_objects_drafts_publish.py
deleted: tests/test_views/test_api_objects_search.py
deleted: tests/test_views/test_api_objects_validate.py
deleted: tests/test_views/test_api_prefixes_create.py
deleted: tests/test_views/test_api_prefixes_token.py
deleted: tests/test_views/test_get_object_id_draft.py
deleted: tests/test_views/test_get_objectid.py
deleted: tests/test_views/test_published_object_by_id.py
modified: token.json

  • Framework for BioCompute model

Changes to be committed:
new file: biocompute/init.py
new file: biocompute/admin.py
new file: biocompute/apis.py
new file: biocompute/migrations/init.py
new file: biocompute/models.py
new file: biocompute/selectors.py
new file: biocompute/services.py
new file: biocompute/urls.py

  • Added files for Prefix model

Changes to be committed:
new file: prefix/init.py
new file: prefix/admin.py
new file: prefix/apis.py
new file: prefix/apps.py
new file: prefix/migrations/init.py
new file: prefix/models.py
new file: prefix/selectors.py
new file: prefix/services.py
new file: prefix/urls.py

  • Tests for authentication

Changes to be committed:
modified: .gitignore
modified: authentication/apis.py
modified: authentication/migrations/0001_initial.py
deleted: authentication/migrations/0002_newuser.py
modified: authentication/services.py
new file: biocompute/migrations/0001_initial.py
modified: docs/refactor.md
new file: prefix/migrations/0001_initial.py
modified: search/selectors.py
new file: test.json
new file: tests/fixtures/old_test_data.json
modified: tests/fixtures/test_data.json
deleted: tests/test_database.py
deleted: tests/test_fixtures.py
deleted: tests/test_models
modified: tests/test_views/test_api_account_activate.py
renamed: tests/test_views/test_api_accounts_describe.py -> tests/test_views/test_api_account_describe.py
modified: tests/test_views/test_api_auth_add.py
modified: tests/test_views/test_api_auth_reset_token.py
deleted: tests/test_views/test_api_groups_group_info.py
deleted: tests/test_views/test_api_groups_modify.py
deleted: tests/test_views/test_api_objects.py
deleted: tests/test_views/test_api_objects_drafts_create.py
deleted: tests/test_views/test_api_objects_drafts_modify.py
deleted: tests/test_views/test_api_objects_drafts_publish.py
deleted: tests/test_views/test_api_objects_search.py
deleted: tests/test_views/test_api_objects_validate.py
deleted: tests/test_views/test_api_prefixes_create.py
deleted: tests/test_views/test_api_prefixes_token.py
deleted: tests/test_views/test_get_object_id_draft.py
deleted: tests/test_views/test_get_objectid.py
deleted: tests/test_views/test_published_object_by_id.py
modified: token.json

  • Move Swagger files and implement BCO draft create

Changes to be committed:
modified: biocompute/apis.py
modified: biocompute/models.py
modified: biocompute/services.py
modified: biocompute/urls.py
new file: config/services.py
modified: config/urls.py
modified: docs/refactor.md
modified: prefix/urls.py
new file: tests/fixtures/example_bco.py
new file: tests/test_views/test_api_objects_drafts_create.py

  • Doc fix in Bco.models Changes to be committed:
    modified: biocompute/models.py

  • Updated biocompute.model and prefix.model

Added the DraftsCreateApi and tests.
This included serializers for BCO creation
Changes to be committed:
modified: biocompute/apis.py
modified: biocompute/services.py
modified: config/services.py
modified: prefix/models.py
modified: prefix/services.py
modified: test.json
modified: tests/fixtures/test_data.json
new file: tests/test_views/test_api_objects_drafts_create.py

  • Implemented PrefixesCreateApi

Changes to be committed:
modified: biocompute/apis.py
modified: config/fixtures/local_data.json
modified: config/services.py
modified: config/urls.py
modified: prefix/apis.py
modified: prefix/services.py
modified: prefix/urls.py
modified: search/apis.py
modified: tests/test_views/test_api_auth_remove.py
modified: tests/test_views/test_api_objects_drafts_create.py
new file: tests/test_views/test_api_prefixes_create.py

  • Added Prefix management URLs and APIs

Changes to be committed:
modified: config/fixtures/local_data.json
modified: docs/refactor.md
modified: prefix/apis.py
modified: prefix/services.py
modified: prefix/urls.py
modified: tests/fixtures/test_data.json
deleted: tests/test_views/test_api_prefixes_create.py
new file: tests/test_views/test_prefixes_create.py
new file: tests/test_views/test_prefixes_modify.py

  • Cleaning up some things Changes to be committed:
    modified: biocompute/apis.py
    modified: biocompute/migrations/0001_initial.py
    modified: prefix/apis.py
    modified: prefix/migrations/0001_initial.py
    new file: tests/test_views/test_account_activate.py
    new file: tests/test_views/test_account_describe.py
    new file: tests/test_views/test_account_new.py
    new file: tests/test_views/test_auth_add.py
    new file: tests/test_views/test_auth_remove.py
    new file: tests/test_views/test_auth_reset_token.py
    new file: tests/test_views/test_objects_drafts_create.py

  • Add prefix creation function Changes to be committed:
    modified: authentication/services.py
    modified: biocompute/models.py
    modified: config/settings.py
    modified: docs/refactor.md
    modified: prefix/apis.py
    modified: prefix/models.py
    modified: prefix/services.py
    modified: tests/test_views/test_api_objects_drafts_create.py

  • Add Prefix Modify API endpoint On branch prefix_perms
    Your branch is up to date with 'origin/prefix_perms'.

Changes to be committed:
modified: config/services.py
modified: prefix/apis.py
modified: prefix/models.py
modified: prefix/selectors.py
modified: prefix/services.py

  • response_c

  • Add DraftRetrieveApi

To do this functions related to Prefixes and the associated permissions were created

Changes to be committed:
modified: biocompute/apis.py
modified: biocompute/models.py
modified: biocompute/selectors.py
modified: biocompute/services.py
modified: biocompute/urls.py
modified: config/asgi.py
modified: config/fixtures/local_data.json
modified: config/services.py
modified: config/urls.py
modified: prefix/selectors.py
modified: prefix/services.py
deleted: test.json
modified: tests/fixtures/example_bco.py
modified: tests/fixtures/test_data.json
deleted: token.json

  • Update testing functions

Created subdirectory and moved test functions
Changes to be committed:
renamed: tests/test_views/init.py -> tests/test_apis/init.py
new file: tests/test_apis/test_api_authentication/init.py
renamed: tests/test_views/test_account_activate.py -> tests/test_apis/test_api_authentication/test_account_activate.py
renamed: tests/test_views/test_account_describe.py -> tests/test_apis/test_api_authentication/test_account_describe.py
renamed: tests/test_views/test_account_new.py -> tests/test_apis/test_api_authentication/test_account_new.py
renamed: tests/test_views/test_api_auth_add.py -> tests/test_apis/test_api_authentication/test_api_auth_add.py
renamed: tests/test_views/test_api_auth_remove.py -> tests/test_apis/test_api_authentication/test_api_auth_remove.py
renamed: tests/test_views/test_api_auth_reset_token.py -> tests/test_apis/test_api_authentication/test_api_auth_reset_token.py
renamed: tests/test_views/test_api_objects_drafts_create.py -> tests/test_apis/test_api_objects_drafts_create.py
renamed: tests/test_views/test_auth_add.py -> tests/test_apis/test_auth_add.py
renamed: tests/test_views/test_auth_remove.py -> tests/test_apis/test_auth_remove.py
renamed: tests/test_views/test_auth_reset_token.py -> tests/test_apis/test_auth_reset_token.py
renamed: tests/test_views/test_objects_drafts_create.py -> tests/test_apis/test_objects_drafts_create.py
renamed: tests/test_views/test_prefixes_create.py -> tests/test_apis/test_prefixes_create.py
new file: tests/test_apis/test_prefixes_modify.py
deleted: tests/test_views/test_api_account_activate.py
deleted: tests/test_views/test_api_account_describe.py
deleted: tests/test_views/test_api_account_new.py
deleted: tests/test_views/test_prefixes_modify.py

  • Add DraftRetrieveApi

To do this functions related to Prefixes and the associated permissions were created

Changes to be committed:
modified: biocompute/apis.py
modified: biocompute/models.py
modified: biocompute/selectors.py
modified: biocompute/services.py
modified: biocompute/urls.py
modified: config/asgi.py
modified: config/fixtures/local_data.json
modified: config/services.py
modified: config/urls.py
modified: prefix/selectors.py
modified: prefix/services.py
deleted: test.json
modified: tests/fixtures/example_bco.py
modified: tests/fixtures/test_data.json
deleted: token.json

  • Update testing functions

Created subdirectory and moved test functions
Changes to be committed:
renamed: tests/test_views/init.py -> tests/test_apis/init.py
new file: tests/test_apis/test_api_authentication/init.py
renamed: tests/test_views/test_account_activate.py -> tests/test_apis/test_api_authentication/test_account_activate.py
renamed: tests/test_views/test_account_describe.py -> tests/test_apis/test_api_authentication/test_account_describe.py
renamed: tests/test_views/test_account_new.py -> tests/test_apis/test_api_authentication/test_account_new.py
renamed: tests/test_views/test_api_auth_add.py -> tests/test_apis/test_api_authentication/test_api_auth_add.py
renamed: tests/test_views/test_api_auth_remove.py -> tests/test_apis/test_api_authentication/test_api_auth_remove.py
renamed: tests/test_views/test_api_auth_reset_token.py -> tests/test_apis/test_api_authentication/test_api_auth_reset_token.py
renamed: tests/test_views/test_api_objects_drafts_create.py -> tests/test_apis/test_api_objects_drafts_create.py
renamed: tests/test_views/test_auth_add.py -> tests/test_apis/test_auth_add.py
renamed: tests/test_views/test_auth_remove.py -> tests/test_apis/test_auth_remove.py
renamed: tests/test_views/test_auth_reset_token.py -> tests/test_apis/test_auth_reset_token.py
renamed: tests/test_views/test_objects_drafts_create.py -> tests/test_apis/test_objects_drafts_create.py
renamed: tests/test_views/test_prefixes_create.py -> tests/test_apis/test_prefixes_create.py
new file: tests/test_apis/test_prefixes_modify.py
deleted: tests/test_views/test_api_account_activate.py
deleted: tests/test_views/test_api_account_describe.py
deleted: tests/test_views/test_api_account_new.py
deleted: tests/test_views/test_prefixes_modify.py

  • Update to Test functions

Changes to be committed:
modified: biocompute/migrations/0001_initial.py
modified: docs/refactor.md
modified: prefix/apis.py
modified: prefix/migrations/0001_initial.py
modified: prefix/services.py
new file: tests/fixtures/bco_dump.json
modified: tests/fixtures/test_data.json
deleted: tests/test_apis/test_api_authentication/test_api_auth_add.py
deleted: tests/test_apis/test_api_authentication/test_api_auth_reset_token.py
renamed: tests/test_apis/test_auth_add.py -> tests/test_apis/test_api_authentication/test_auth_add.py
renamed: tests/test_apis/test_auth_reset_token.py -> tests/test_apis/test_api_authentication/test_auth_reset_token.py
renamed: tests/test_apis/test_api_authentication/test_api_auth_remove.py -> tests/test_apis/test_api_authentication/testi_auth_remove.py
deleted: tests/test_apis/test_api_objects_drafts_create.py
new file: tests/test_apis/test_api_prefix/init.py
renamed: tests/test_apis/test_prefixes_create.py -> tests/test_apis/test_api_prefix/test_prefixes_create.py
renamed: tests/test_apis/test_prefixes_modify.py -> tests/test_apis/test_api_prefix/test_prefixes_modify.py
deleted: tests/test_apis/test_auth_remove.py
new file: tests/test_apis/test_biocompute/init.py
renamed: tests/test_apis/test_objects_drafts_create.py -> tests/test_apis/test_biocompute/test_objects_drafts_create.py

To do this functions related to Prefixes and the associated permissions were created

Changes to be committed:
modified: biocompute/apis.py
modified: biocompute/models.py
modified: biocompute/selectors.py
modified: biocompute/services.py
modified: biocompute/urls.py
modified: config/asgi.py
modified: config/fixtures/local_data.json
modified: config/services.py
modified: config/urls.py
modified: prefix/selectors.py
modified: prefix/services.py
deleted: test.json
modified: tests/fixtures/example_bco.py
modified: tests/fixtures/test_data.json
deleted: token.json

  • Update testing functions

Created subdirectory and moved test functions
Changes to be committed:
renamed: tests/test_views/init.py -> tests/test_apis/init.py
new file: tests/test_apis/test_api_authentication/init.py
renamed: tests/test_views/test_account_activate.py -> tests/test_apis/test_api_authentication/test_account_activate.py
renamed: tests/test_views/test_account_describe.py -> tests/test_apis/test_api_authentication/test_account_describe.py
renamed: tests/test_views/test_account_new.py -> tests/test_apis/test_api_authentication/test_account_new.py
renamed: tests/test_views/test_api_auth_add.py -> tests/test_apis/test_api_authentication/test_api_auth_add.py
renamed: tests/test_views/test_api_auth_remove.py -> tests/test_apis/test_api_authentication/test_api_auth_remove.py
renamed: tests/test_views/test_api_auth_reset_token.py -> tests/test_apis/test_api_authentication/test_api_auth_reset_token.py
renamed: tests/test_views/test_api_objects_drafts_create.py -> tests/test_apis/test_api_objects_drafts_create.py
renamed: tests/test_views/test_auth_add.py -> tests/test_apis/test_auth_add.py
renamed: tests/test_views/test_auth_remove.py -> tests/test_apis/test_auth_remove.py
renamed: tests/test_views/test_auth_reset_token.py -> tests/test_apis/test_auth_reset_token.py
renamed: tests/test_views/test_objects_drafts_create.py -> tests/test_apis/test_objects_drafts_create.py
renamed: tests/test_views/test_prefixes_create.py -> tests/test_apis/test_prefixes_create.py
new file: tests/test_apis/test_prefixes_modify.py
deleted: tests/test_views/test_api_account_activate.py
deleted: tests/test_views/test_api_account_describe.py
deleted: tests/test_views/test_api_account_new.py
deleted: tests/test_views/test_prefixes_modify.py

  • Update to Test functions

Changes to be committed:
modified: biocompute/migrations/0001_initial.py
modified: docs/refactor.md
modified: prefix/apis.py
modified: prefix/migrations/0001_initial.py
modified: prefix/services.py
new file: tests/fixtures/bco_dump.json
modified: tests/fixtures/test_data.json
deleted: tests/test_apis/test_api_authentication/test_api_auth_add.py
deleted: tests/test_apis/test_api_authentication/test_api_auth_reset_token.py
renamed: tests/test_apis/test_auth_add.py -> tests/test_apis/test_api_authentication/test_auth_add.py
renamed: tests/test_apis/test_auth_reset_token.py -> tests/test_apis/test_api_authentication/test_auth_reset_token.py
renamed: tests/test_apis/test_api_authentication/test_api_auth_remove.py -> tests/test_apis/test_api_authentication/testi_auth_remove.py
deleted: tests/test_apis/test_api_objects_drafts_create.py
new file: tests/test_apis/test_api_prefix/init.py
renamed: tests/test_apis/test_prefixes_create.py -> tests/test_apis/test_api_prefix/test_prefixes_create.py
renamed: tests/test_apis/test_prefixes_modify.py -> tests/test_apis/test_api_prefix/test_prefixes_modify.py
deleted: tests/test_apis/test_auth_remove.py
new file: tests/test_apis/test_biocompute/init.py
renamed: tests/test_apis/test_objects_drafts_create.py -> tests/test_apis/test_biocompute/test_objects_drafts_create.py

  • Add access_count incrementer to DraftRetrieveApi

Changes to be committed:
modified: biocompute/apis.py
modified: biocompute/services.py
modified: prefix/services.py

  • Added PublishedRetrieveApi class Changes to be committed:
    modified: biocompute/apis.py
    modified: biocompute/selectors.py
    modified: config/urls.py

  • Update test DB and testing functions

Changes to be committed:
modified: config/fixtures/local_data.json
modified: tests/fixtures/test_data.json
deleted: tests/test_apis/test_api_objects_drafts_create.py
deleted: tests/test_apis/test_auth_add.py
deleted: tests/test_apis/test_auth_remove.py
deleted: tests/test_apis/test_auth_reset_token.py
renamed: tests/test_apis/test_objects_drafts_create.py -> tests/test_apis/test_biocompute/objects_drafts_create.py
deleted: tests/test_apis/test_prefixes_create.py
deleted: tests/test_apis/test_prefixes_modify.py

  • Add DraftsModifyApi

Changes to be committed:
modified: biocompute/apis.py
modified: biocompute/selectors.py
modified: biocompute/services.py
modified: biocompute/urls.py
modified: prefix/selectors.py
deleted: tests/test_apis/test_biocompute/objects_drafts_create.py
deleted: tests/test_apis/test_biocompute/test_objects_drafts_create.py

  • test for objects_drafts_create

Changes to be committed:
new file: tests/test_apis/test_biocompute/test_objects_drafts_create.py

Changes to be committed:
modified: biocompute/apis.py
modified: biocompute/selectors.py
modified: biocompute/services.py
modified: biocompute/urls.py
modified: prefix/selectors.py
deleted: tests/test_apis/test_biocompute/objects_drafts_create.py
deleted: tests/test_apis/test_biocompute/test_objects_drafts_create.py

  • Add IEEE schema Changes to be committed:
    new file: .secrets
    new file: config/IEEE/2791object.json
    new file: config/IEEE/description_domain.json
    new file: config/IEEE/error_domain.json
    new file: config/IEEE/execution_domain.json
    new file: config/IEEE/io_domain.json
    new file: config/IEEE/parametric_domain.json
    new file: config/IEEE/provenance_domain.json
    new file: config/IEEE/usability_domain.json

  • test_objects_drafts_create Changes to be committed:
    new file: tests/test_apis/test_biocompute/test_objects_drafts_create.py

  • Fix test Changes to be committed:
    modified: tests/test_apis/test_biocompute/test_objects_drafts_create.py

  • Enable publish bco endpoint

This included a great many supporting functions
and permission checks to accomplish. Also added
the validate functions to the codebase

Changes to be committed:
modified: biocompute/apis.py
modified: biocompute/selectors.py
modified: biocompute/services.py
modified: biocompute/urls.py
modified: config/services.py
modified: docs/refactor.md
modified: prefix/selectors.py
new file: tests/test_apis/test_biocompute/test_objects_drafts_publish.py

  • Add BCO Score to model.

Also added functions and methods for BCO Score.
Updates to the BCO admin panel.
Updates to the test_data.json and local_data.json Fix # 310
Changes to be committed:
modified: authentication/migrations/0001_initial.py
modified: biocompute/admin.py
modified: biocompute/apis.py
modified: biocompute/migrations/0001_initial.py
modified: biocompute/models.py
modified: biocompute/services.py
new file: config/bco_scores.py
modified: config/fixtures/local_data.json
modified: tests/fixtures/test_data.json

  • Add BCODB search API endpoint.

Changes to be committed:
modified: biocompute/apis.py
modified: search/apis.py
modified: search/selectors.py
modified: search/urls.py

  • Add POST search Changes to be committed:
    modified: authentication/apis.py
    modified: search/apis.py

  • Updated config file to .secrets

also updated accounts/describe
Changes to be committed:
modified: .gitignore
new file: .secrets.example
modified: authentication/selectors.py
modified: biocompute/apis.py
modified: biocompute/models.py
modified: biocompute/selectors.py
modified: config/settings.py
deleted: server.conf
deleted: sever.conf.example

  • Fix config/urls.py error Changes to be committed:
    deleted: .secrets
    modified: config/settings.py
    modified: config/urls.py

  • Refactor config/services.py::response_constructor Changes to be committed:
    modified: config/services.py
    modified: tests/test_apis/test_api_prefix/test_prefixes_create.py

  • Prefix registry (Prefix registry #318)

  • Created test_objects_drafts_modify, hasn't passed test yet

  • Created test_objects_drafts_modify, hasn't passed test yet

  • Created test_objects_drafts_modify, hasn't passed test yet

  • new tests

  • Update modify_prefix permissions Changes to be committed:
    modified: authentication/selectors.py
    modified: config/fixtures/local_data.json
    modified: prefix/services.py

  • Created and tested test_objects_drafts_modify API

  • Fixes for Prefix creation

Changes to be committed:
modified: config/services.py
modified: prefix/apis.py
modified: tests/test_apis/test_api_prefix/test_prefixes_create.py

  • Add UserSearch endpoint

Changes to be committed:
modified: prefix/apis.py
modified: prefix/selectors.py
modified: search/apis.py
modified: search/urls.py

  • Fixes for deployment

Changes to be committed:
modified: .secrets.example
modified: admin_only/bco_api.service
modified: biocompute/apis.py
modified: config/fixtures/test_portal.json
modified: config/settings.py
modified: tests/fixtures/test_data.json
modified: tests/test_apis/test_biocompute/test_objects_drafts_create.py

  • test_objects_drafts_publish failed. Kicking back to Hadley for more investigation

  • Update bco_api.conf

Changes to be committed:
modified: admin_only/bco_api.conf


  • Fixes for testing files

Changes to be committed:
modified: biocompute/apis.py
modified: biocompute/services.py
modified: config/bco_scores.py
modified: config/services.py
modified: config/settings.py
modified: config/urls.py
modified: tests/fixtures/test_data.json
renamed: tests/fixtures/example_bco.py -> tests/fixtures/testing_bcos.py
modified: tests/test_apis/test_api_prefix/test_prefixes_create.py
modified: tests/test_apis/test_biocompute/test_objects_drafts_modify.py
modified: tests/test_apis/test_biocompute/test_objects_drafts_publish.py

  • "derrived_from": []

  • fix test

  • Add Validate url endpoint

Changes to be committed:
modified: biocompute/apis.py
modified: biocompute/urls.py
modified: tests/test_apis/test_biocompute/test_objects_drafts_create.py
modified: tests/test_apis/test_biocompute/test_objects_drafts_publish.py

  • Update create test to include HOSTNAME

Changes to be committed:
modified: config/services.py
modified: tests/test_apis/test_biocompute/test_objects_drafts_create.py

  • Rollback status for validation

Changes to be committed:
modified: biocompute/apis.py

  • Changes to be committed:
    modified: biocompute/apis.py

  • Typo fix Changes to be committed:
    modified: biocompute/apis.py

  • Add test_portal.json for testing

Changes to be committed:
modified: config/fixtures/test_portal.json

  • Testing fixes

Changes to be committed:
modified: admin_only/bco_api.conf
modified: config/fixtures/test_portal.json

  • Fix for draft publish

Changes to be committed:
modified: config/services.py

  • Add new_bco_instance.save()

Changes to be committed:
modified: biocompute/services.py
modified: config/services.py

  • CustomJSONWebTokenAuthentication for GET Pub BCO Changes to be committed:
    modified: biocompute/apis.py

  • Updates to authentication.apis.py Changes to be committed:
    modified: authentication/apis.py
    modified: authentication/services.py
    modified: search/apis.py

  • Updates to biocompute.apis.py

Changes to be committed:
modified: biocompute/apis.py
modified: biocompute/selectors.py
modified: search/apis.py
modified: tests/fixtures/testing_bcos.py
modified: tests/test_apis/test_biocompute/test_objects_drafts_create.py

  • Remove print statements

Changes to be committed:
modified: authentication/apis.py
modified: authentication/services.py
modified: authentication/urls.py
modified: biocompute/apis.py
modified: biocompute/services.py
modified: config/urls.py
modified: prefix/services.py
modified: tests/test_apis/test_biocompute/test_objects_drafts_publish.py

  • Updates to prefix.apis

Changes to be committed:
modified: prefix/apis.py

  • print(

  • change publish bco rejected response

On branch docs
Your branch is up to date with 'origin/docs'.


* Change `bcodb` directory to `config` directory

Changes to be committed:
	modified:   .gitignore
	deleted:    bcodb/settings.py
	renamed:    bcodb/__init__.py -> config/__init__.py
	renamed:    bcodb/asgi.py -> config/asgi.py
	renamed:    bcodb/fixtures/local_data.json -> config/fixtures/local_data.json
	renamed:    bcodb/fixtures/test_portal.json -> config/fixtures/test_portal.json
	renamed:    bcodb/urls.py -> config/urls.py
	renamed:    bcodb/wsgi.py -> config/wsgi.py
	modified:   manage.py

* Create NewUser model and remove new_user model

changed model behind `/api/accounts/new/`
Changes to be committed:
	modified:   api/admin.py
	new file:   api/migrations/0006_delete_new_users.py
	modified:   api/models.py
	deleted:    api/scripts/method_specific/POST_api_accounts_new.py
	modified:   api/urls.py
	modified:   api/views.py
	modified:   authentication/admin.py
	modified:   authentication/apis.py
	new file:   authentication/migrations/0002_newuser.py
	modified:   authentication/models.py
	modified:   authentication/selectors.py
	modified:   authentication/services.py
	modified:   tests/fixtures/test_data.json
	modified:   tests/test_views/test_api_account_activate.py
	modified:   tests/test_views/test_api_account_new.py

* Add example values to test account request

Changes to be committed:
	modified:   authentication/apis.py
	new file:   docs/refactor.md

* Account activation has been enabled.

On branch account_authorization
Changes to be committed:
	modified:   api/urls.py
	modified:   api/views.py
	modified:   authentication/apis.py
	modified:   authentication/selectors.py
	modified:   authentication/services.py
	modified:   authentication/urls.py

* Account authorization (#277)

* Account activation has been enabled.

On branch account_authorization
Changes to be committed:
	modified:   api/urls.py
	modified:   api/views.py
	modified:   authentication/apis.py
	modified:   authentication/selectors.py
	modified:   authentication/services.py
	modified:   authentication/urls.py

* get_new_user

* Remove API app
Changes to be committed:
	deleted:    api/__init__.py
	deleted:    api/admin.py
	deleted:    api/apps.py
	deleted:    api/fixtures/bootstrap.json
	deleted:    api/fixtures/metafixtures
	deleted:    api/fixtures/metafixtures.json
	deleted:    api/keys.sh
	deleted:    api/migrations/0001_initial.py
	deleted:    api/migrations/0002_auto_20220124_2356.py
	deleted:    api/migrations/0003_rename_meta_table_prefix_table.py
	deleted:    api/migrations/0004_rename_group_info_groupinfo.py
	deleted:    api/migrations/0005_rename_prefixes_prefix.py
	deleted:    api/migrations/0006_delete_new_users.py
	deleted:    api/migrations/__init__.py
	deleted:    api/model/__init__.py
	deleted:    api/model/groups.py
	deleted:    api/model/prefix.py
	deleted:    api/models.py
	deleted:    api/permissions.py
	deleted:    api/rdb.sh
	deleted:    api/request_definitions/GET.schema
	deleted:    api/request_definitions/POST.schema
	deleted:    api/request_definitions/templates/DELETE_delete_object_by_id.schema
	deleted:    api/request_definitions/templates/GET_activate_account.schema
	deleted:    api/request_definitions/templates/GET_get_object_by_id.schema
	deleted:    api/request_definitions/templates/GET_retrieve_available_schema.schema
	deleted:    api/request_definitions/templates/POST_convert_existing_object_between_schemas.schema
	deleted:    api/request_definitions/templates/POST_convert_payload_to_schema.schema
	deleted:    api/request_definitions/templates/POST_new_account.schema
	deleted:    api/request_definitions/templates/POST_object_listing_by_token.schema
	deleted:    api/request_definitions/templates/POST_objects_draft.schema
	deleted:    api/request_definitions/templates/POST_objects_publish.schema
	deleted:    api/request_definitions/templates/POST_read_object.schema
	deleted:    api/request_definitions/templates/POST_validate_payload_against_schema.schema
	deleted:    api/scripts/__init__.py
	deleted:    api/scripts/method_specific/GET_draft_object_by_id.py
	deleted:    api/scripts/method_specific/GET_published_object_by_id.py
	deleted:    api/scripts/method_specific/GET_published_object_by_id_with_version.py
	deleted:    api/scripts/method_specific/GET_retrieve_available_schema.py
	deleted:    api/scripts/method_specific/POST_api_objects_drafts_create.py
	deleted:    api/scripts/method_specific/POST_api_objects_drafts_delete.py
	deleted:    api/scripts/method_specific/POST_api_objects_drafts_modify.py
	deleted:    api/scripts/method_specific/POST_api_objects_drafts_permissions.py
	deleted:    api/scripts/method_specific/POST_api_objects_drafts_permissions_set.py
	deleted:    api/scripts/method_specific/POST_api_objects_drafts_publish.py
	deleted:    api/scripts/method_specific/POST_api_objects_drafts_read.py
	deleted:    api/scripts/method_specific/POST_api_objects_drafts_token.py
	deleted:    api/scripts/method_specific/POST_api_objects_publish.py
	deleted:    api/scripts/method_specific/POST_api_objects_published.py
	deleted:    api/scripts/method_specific/POST_api_objects_search.py
	deleted:    api/scripts/method_specific/POST_api_objects_token.py
	deleted:    api/scripts/method_specific/POST_validate_payload_against_schema.py
	deleted:    api/scripts/method_specific/__init__.py
	deleted:    api/scripts/utilities/DbUtils.py
	deleted:    api/scripts/utilities/FileUtils.py
	deleted:    api/scripts/utilities/JsonUtils.py
	deleted:    api/scripts/utilities/RequestUtils.py
	deleted:    api/scripts/utilities/ResponseUtils.py
	deleted:    api/scripts/utilities/SettingsUtils.py
	deleted:    api/scripts/utilities/UserUtils.py
	deleted:    api/scripts/utilities/__init__.py
	deleted:    api/serializers.py
	deleted:    api/signals.py
	deleted:    api/templates/api/account_activation_message.html
	deleted:    api/urls.py
	deleted:    api/validation_definitions/IEEE/2791object.json
	deleted:    api/validation_definitions/IEEE/description_domain.json
	deleted:    api/validation_definitions/IEEE/error_domain.json
	deleted:    api/validation_definitions/IEEE/execution_domain.json
	deleted:    api/validation_definitions/IEEE/io_domain.json
	deleted:    api/validation_definitions/IEEE/parametric_domain.json
	deleted:    api/validation_definitions/IEEE/provenance_domain.json
	deleted:    api/validation_definitions/IEEE/usability_domain.json
	deleted:    api/validation_definitions/IEEE_sub/IEEE2791-2020.schema
	deleted:    api/validation_definitions/IEEE_sub/domains/description_domain.json
	deleted:    api/validation_definitions/IEEE_sub/domains/error_domain.json
	deleted:    api/validation_definitions/IEEE_sub/domains/execution_domain.json
	deleted:    api/validation_definitions/IEEE_sub/domains/io_domain.json
	deleted:    api/validation_definitions/IEEE_sub/domains/parametric_domain.json
	deleted:    api/validation_definitions/IEEE_sub/domains/provenance_domain.json
	deleted:    api/validation_definitions/IEEE_sub/domains/usability_domain.json
	deleted:    api/validation_definitions/uri_external
	deleted:    api/views.py
	new file:   config/settings.py
	modified:   config/urls.py

Changes not staged for commit:
	modified:   authentication/apis.py
	modified:   authentication/migrations/0001_initial.py
	deleted:    authentication/migrations/0002_newuser.py
	modified:   authentication/services.py
	modified:   docs/refactor.md
	modified:   search/selectors.py
	modified:   tests/fixtures/test_data.json
	deleted:    tests/test_database.py
	deleted:    tests/test_fixtures.py
	deleted:    tests/test_models
	modified:   tests/test_views/test_api_account_activate.py
	deleted:    tests/test_views/test_api_accounts_describe.py
	modified:   tests/test_views/test_api_auth_add.py
	modified:   tests/test_views/test_api_auth_reset_token.py
	deleted:    tests/test_views/test_api_groups_group_info.py
	deleted:    tests/test_views/test_api_groups_modify.py
	deleted:    tests/test_views/test_api_objects.py
	deleted:    tests/test_views/test_api_objects_drafts_create.py
	deleted:    tests/test_views/test_api_objects_drafts_modify.py
	deleted:    tests/test_views/test_api_objects_drafts_publish.py
	deleted:    tests/test_views/test_api_objects_search.py
	deleted:    tests/test_views/test_api_objects_validate.py
	deleted:    tests/test_views/test_api_prefixes_create.py
	deleted:    tests/test_views/test_api_prefixes_token.py
	deleted:    tests/test_views/test_get_object_id_draft.py
	deleted:    tests/test_views/test_get_objectid.py
	deleted:    tests/test_views/test_published_object_by_id.py
	modified:   token.json

* Framework for BioCompute model

Changes to be committed:
	new file:   biocompute/__init__.py
	new file:   biocompute/admin.py
	new file:   biocompute/apis.py
	new file:   biocompute/migrations/__init__.py
	new file:   biocompute/models.py
	new file:   biocompute/selectors.py
	new file:   biocompute/services.py
	new file:   biocompute/urls.py

* Added files for Prefix model

Changes to be committed:
	new file:   prefix/__init__.py
	new file:   prefix/admin.py
	new file:   prefix/apis.py
	new file:   prefix/apps.py
	new file:   prefix/migrations/__init__.py
	new file:   prefix/models.py
	new file:   prefix/selectors.py
	new file:   prefix/services.py
	new file:   prefix/urls.py

* Tests for authentication

Changes to be committed:
	modified:   .gitignore
	modified:   authentication/apis.py
	modified:   authentication/migrations/0001_initial.py
	deleted:    authentication/migrations/0002_newuser.py
	modified:   authentication/services.py
	new file:   biocompute/migrations/0001_initial.py
	modified:   docs/refactor.md
	new file:   prefix/migrations/0001_initial.py
	modified:   search/selectors.py
	new file:   test.json
	new file:   tests/fixtures/old_test_data.json
	modified:   tests/fixtures/test_data.json
	deleted:    tests/test_database.py
	deleted:    tests/test_fixtures.py
	deleted:    tests/test_models
	modified:   tests/test_views/test_api_account_activate.py
	renamed:    tests/test_views/test_api_accounts_describe.py -> tests/test_views/test_api_account_describe.py
	modified:   tests/test_views/test_api_auth_add.py
	modified:   tests/test_views/test_api_auth_reset_token.py
	deleted:    tests/test_views/test_api_groups_group_info.py
	deleted:    tests/test_views/test_api_groups_modify.py
	deleted:    tests/test_views/test_api_objects.py
	deleted:    tests/test_views/test_api_objects_drafts_create.py
	deleted:    tests/test_views/test_api_objects_drafts_modify.py
	deleted:    tests/test_views/test_api_objects_drafts_publish.py
	deleted:    tests/test_views/test_api_objects_search.py
	deleted:    tests/test_views/test_api_objects_validate.py
	deleted:    tests/test_views/test_api_prefixes_create.py
	deleted:    tests/test_views/test_api_prefixes_token.py
	deleted:    tests/test_views/test_get_object_id_draft.py
	deleted:    tests/test_views/test_get_objectid.py
	deleted:    tests/test_views/test_published_object_by_id.py
	modified:   token.json

* Swagger move (#283)

* Remove API app
Changes to be committed:
	deleted:    api/__init__.py
	deleted:    api/admin.py
	deleted:    api/apps.py
	deleted:    api/fixtures/bootstrap.json
	deleted:    api/fixtures/metafixtures
	deleted:    api/fixtures/metafixtures.json
	deleted:    api/keys.sh
	deleted:    api/migrations/0001_initial.py
	deleted:    api/migrations/0002_auto_20220124_2356.py
	deleted:    api/migrations/0003_rename_meta_table_prefix_table.py
	deleted:    api/migrations/0004_rename_group_info_groupinfo.py
	deleted:    api/migrations/0005_rename_prefixes_prefix.py
	deleted:    api/migrations/0006_delete_new_users.py
	deleted:    api/migrations/__init__.py
	deleted:    api/model/__init__.py
	deleted:    api/model/groups.py
	deleted:    api/model/prefix.py
	deleted:    api/models.py
	deleted:    api/permissions.py
	deleted:    api/rdb.sh
	deleted:    api/request_definitions/GET.schema
	deleted:    api/request_definitions/POST.schema
	deleted:    api/request_definitions/templates/DELETE_delete_object_by_id.schema
	deleted:    api/request_definitions/templates/GET_activate_account.schema
	deleted:    api/request_definitions/templates/GET_get_object_by_id.schema
	deleted:    api/request_definitions/templates/GET_retrieve_available_schema.schema
	deleted:    api/request_definitions/templates/POST_convert_existing_object_between_schemas.schema
	deleted:    api/request_definitions/templates/POST_convert_payload_to_schema.schema
	deleted:    api/request_definitions/templates/POST_new_account.schema
	deleted:    api/request_definitions/templates/POST_object_listing_by_token.schema
	deleted:    api/request_definitions/templates/POST_objects_draft.schema
	deleted:    api/request_definitions/templates/POST_objects_publish.schema
	deleted:    api/request_definitions/templates/POST_read_object.schema
	deleted:    api/request_definitions/templates/POST_validate_payload_against_schema.schema
	deleted:    api/scripts/__init__.py
	deleted:    api/scripts/method_specific/GET_draft_object_by_id.py
	deleted:    api/scripts/method_specific/GET_published_object_by_id.py
	deleted:    api/scripts/method_specific/GET_published_object_by_id_with_version.py
	deleted:    api/scripts/method_specific/GET_retrieve_available_schema.py
	deleted:    api/scripts/method_specific/POST_api_objects_drafts_create.py
	deleted:    api/scripts/method_specific/POST_api_objects_drafts_delete.py
	deleted:    api/scripts/method_specific/POST_api_objects_drafts_modify.py
	deleted:    api/scripts/method_specific/POST_api_objects_drafts_permissions.py
	deleted:    api/scripts/method_specific/POST_api_objects_drafts_permissions_set.py
	deleted:    api/scripts/method_specific/POST_api_objects_drafts_publish.py
	deleted:    api/scripts/method_specific/POST_api_objects_drafts_read.py
	deleted:    api/scripts/method_specific/POST_api_objects_drafts_token.py
	deleted:    api/scripts/method_specific/POST_api_objects_publish.py
	deleted:    api/scripts/method_specific/POST_api_objects_published.py
	deleted:    api/scripts/method_specific/POST_api_objects_search.py
	deleted:    api/scripts/method_specific/POST_api_objects_token.py
	deleted:    api/scripts/method_specific/POST_validate_payload_against_schema.py
	deleted:    api/scripts/method_specific/__init__.py
	deleted:    api/scripts/utilities/DbUtils.py
	deleted:    api/scripts/utilities/FileUtils.py
	deleted:    api/scripts/utilities/JsonUtils.py
	deleted:    api/scripts/utilities/RequestUtils.py
	deleted:    api/scripts/utilities/ResponseUtils.py
	deleted:    api/scripts/utilities/SettingsUtils.py
	deleted:    api/scripts/utilities/UserUtils.py
	deleted:    api/scripts/utilities/__init__.py
	deleted:    api/serializers.py
	deleted:    api/signals.py
	deleted:    api/templates/api/account_activation_message.html
	deleted:    api/urls.py
	deleted:    api/validation_definitions/IEEE/2791object.json
	deleted:    api/validation_definitions/IEEE/description_domain.json
	deleted:    api/validation_definitions/IEEE/error_domain.json
	deleted:    api/validation_definitions/IEEE/execution_domain.json
	deleted:    api/validation_definitions/IEEE/io_domain.json
	deleted:    api/validation_definitions/IEEE/parametric_domain.json
	deleted:    api/validation_definitions/IEEE/provenance_domain.json
	deleted:    api/validation_definitions/IEEE/usability_domain.json
	deleted:    api/validation_definitions/IEEE_sub/IEEE2791-2020.schema
	deleted:    api/validation_definitions/IEEE_sub/domains/description_domain.json
	deleted:    api/validation_definitions/IEEE_sub/domains/error_domain.json
	deleted:    api/validation_definitions/IEEE_sub/domains/execution_domain.json
	deleted:    api/validation_definitions/IEEE_sub/domains/io_domain.json
	deleted:    api/validation_definitions/IEEE_sub/domains/parametric_domain.json
	deleted:    api/validation_definitions/IEEE_sub/domains/provenance_domain.json
	deleted:    api/validation_definitions/IEEE_sub/domains/usability_domain.json
	deleted:    api/validation_definitions/uri_external
	deleted:    api/views.py
	new file:   config/settings.py
	modified:   config/urls.py

Changes not staged for commit:
	modified:   authentication/apis.py
	modified:   authentication/migrations/0001_initial.py
	deleted:    authentication/migrations/0002_newuser.py
	modified:   authentication/services.py
	modified:   docs/refactor.md
	modified:   search/selectors.py
	modified:   tests/fixtures/test_data.json
	deleted:    tests/test_database.py
	deleted:    tests/test_fixtures.py
	deleted:    tests/test_models
	modified:   tests/test_views/test_api_account_activate.py
	deleted:    tests/test_views/test_api_accounts_describe.py
	modified:   tests/test_views/test_api_auth_add.py
	modified:   tests/test_views/test_api_auth_reset_token.py
	deleted:    tests/test_views/test_api_groups_group_info.py
	deleted:    tests/test_views/test_api_groups_modify.py
	deleted:    tests/test_views/test_api_objects.py
	deleted:    tests/test_views/test_api_objects_drafts_create.py
	deleted:    tests/test_views/test_api_objects_drafts_modify.py
	deleted:    tests/test_views/test_api_objects_drafts_publish.py
	deleted:    tests/test_views/test_api_objects_search.py
	deleted:    tests/test_views/test_api_objects_validate.py
	deleted:    tests/test_views/test_api_prefixes_create.py
	deleted:    tests/test_views/test_api_prefixes_token.py
	deleted:    tests/test_views/test_get_object_id_draft.py
	deleted:    tests/test_views/test_get_objectid.py
	deleted:    tests/test_views/test_published_object_by_id.py
	modified:   token.json

* Framework for BioCompute model

Changes to be committed:
	new file:   biocompute/__init__.py
	new file:   biocompute/admin.py
	new file:   biocompute/apis.py
	new file:   biocompute/migrations/__init__.py
	new file:   biocompute/models.py
	new file:   biocompute/selectors.py
	new file:   biocompute/services.py
	new file:   biocompute/urls.py

* Added files for Prefix model

Changes to be committed:
	new file:   prefix/__init__.py
	new file:   prefix/admin.py
	new file:   prefix/apis.py
	new file:   prefix/apps.py
	new file:   prefix/migrations/__init__.py
	new file:   prefix/models.py
	new file:   prefix/selectors.py
	new file:   prefix/services.py
	new file:   prefix/urls.py

* Tests for authentication

Changes to be committed:
	modified:   .gitignore
	modified:   authentication/apis.py
	modified:   authentication/migrations/0001_initial.py
	deleted:    authentication/migrations/0002_newuser.py
	modified:   authentication/services.py
	new file:   biocompute/migrations/0001_initial.py
	modified:   docs/refactor.md
	new file:   prefix/migrations/0001_initial.py
	modified:   search/selectors.py
	new file:   test.json
	new file:   tests/fixtures/old_test_data.json
	modified:   tests/fixtures/test_data.json
	deleted:    tests/test_database.py
	deleted:    tests/test_fixtures.py
	deleted:    tests/test_models
	modified:   tests/test_views/test_api_account_activate.py
	renamed:    tests/test_views/test_api_accounts_describe.py -> tests/test_views/test_api_account_describe.py
	modified:   tests/test_views/test_api_auth_add.py
	modified:   tests/test_views/test_api_auth_reset_token.py
	deleted:    tests/test_views/test_api_groups_group_info.py
	deleted:    tests/test_views/test_api_groups_modify.py
	deleted:    tests/test_views/test_api_objects.py
	deleted:    tests/test_views/test_api_objects_drafts_create.py
	deleted:    tests/test_views/test_api_objects_drafts_modify.py
	deleted:    tests/test_views/test_api_objects_drafts_publish.py
	deleted:    tests/test_views/test_api_objects_search.py
	deleted:    tests/test_views/test_api_objects_validate.py
	deleted:    tests/test_views/test_api_prefixes_create.py
	deleted:    tests/test_views/test_api_prefixes_token.py
	deleted:    tests/test_views/test_get_object_id_draft.py
	deleted:    tests/test_views/test_get_objectid.py
	deleted:    tests/test_views/test_published_object_by_id.py
	modified:   token.json

* Move Swagger files and implement BCO draft create

Changes to be committed:
	modified:   biocompute/apis.py
	modified:   biocompute/models.py
	modified:   biocompute/services.py
	modified:   biocompute/urls.py
	new file:   config/services.py
	modified:   config/urls.py
	modified:   docs/refactor.md
	modified:   prefix/urls.py
	new file:   tests/fixtures/example_bco.py
	new file:   tests/test_views/test_api_objects_drafts_create.py

* Doc fix in Bco.models
Changes to be committed:
	modified:   biocompute/models.py

* Biocompute model (#284)

* Remove API app
Changes to be committed:
	deleted:    api/__init__.py
	deleted:    api/admin.py
	deleted:    api/apps.py
	deleted:    api/fixtures/bootstrap.json
	deleted:    api/fixtures/metafixtures
	deleted:    api/fixtures/metafixtures.json
	deleted:    api/keys.sh
	deleted:    api/migrations/0001_initial.py
	deleted:    api/migrations/0002_auto_20220124_2356.py
	deleted:    api/migrations/0003_rename_meta_table_prefix_table.py
	deleted:    api/migrations/0004_rename_group_info_groupinfo.py
	deleted:    api/migrations/0005_rename_prefixes_prefix.py
	deleted:    api/migrations/0006_delete_new_users.py
	deleted:    api/migrations/__init__.py
	deleted:    api/model/__init__.py
	deleted:    api/model/groups.py
	deleted:    api/model/prefix.py
	deleted:    api/models.py
	deleted:    api/permissions.py
	deleted:    api/rdb.sh
	deleted:    api/request_definitions/GET.schema
	deleted:    api/request_definitions/POST.schema
	deleted:    api/request_definitions/templates/DELETE_delete_object_by_id.schema
	deleted:    api/request_definitions/templates/GET_activate_account.schema
	deleted:    api/request_definitions/templates/GET_get_object_by_id.schema
	deleted:    api/request_definitions/templates/GET_retrieve_available_schema.schema
	deleted:    api/request_definitions/templates/POST_convert_existing_object_between_schemas.schema
	deleted:    api/request_definitions/templates/POST_convert_payload_to_schema.schema
	deleted:    api/request_definitions/templates/POST_new_account.schema
	deleted:    api/request_definitions/templates/POST_object_listing_by_token.schema
	deleted:    api/request_definitions/templates/POST_objects_draft.schema
	deleted:    api/request_definitions/templates/POST_objects_publish.schema
	deleted:    api/request_definitions/templates/POST_read_object.schema
	deleted:    api/request_definitions/templates/POST_validate_payload_against_schema.schema
	deleted:    api/scripts/__init__.py
	deleted:    api/scripts/method_specific/GET_draft_object_by_id.py
	deleted:    api/scripts/method_specific/GET_published_object_by_id.py
	deleted:    api/scripts/method_specific/GET_published_object_by_id_with_version.py
	deleted:    api/scripts/method_specific/GET_retrieve_available_schema.py
	deleted:    api/scripts/method_specific/POST_api_objects_drafts_create.py
	deleted:    api/scripts/method_specific/POST_api_objects_drafts_delete.py
	deleted:    api/scripts/method_specific/POST_api_objects_drafts_modify.py
	deleted:    api/scripts/method_specific/POST_api_objects_drafts_permissions.py
	deleted:    api/scripts/method_specific/POST_api_objects_drafts_permissions_set.py
	deleted:    api/scripts/method_specific/POST_api_objects_drafts_publish.py
	deleted:    api/scripts/method_specific/POST_api_objects_drafts_read.py
	deleted:    api/scripts/method_specific/POST_api_objects_drafts_token.py
	deleted:    api/scripts/method_specific/POST_api_objects_publish.py
	deleted:    api/scripts/method_specific/POST_api_objects_published.py
	deleted:    api/scripts/method_specific/POST_api_objects_search.py
	deleted:    api/scripts/method_specific/POST_api_objects_token.py
	deleted:    api/scripts/method_specific/POST_validate_payload_against_schema.py
	deleted:    api/scripts/method_specific/__init__.py
	deleted:    api/scripts/utilities/DbUtils.py
	deleted:    api/scripts/utilities/FileUtils.py
	deleted:    api/scripts/utilities/JsonUtils.py
	deleted:    api/scripts/utilities/RequestUtils.py
	deleted:    api/scripts/utilities/ResponseUtils.py
	deleted:    api/scripts/utilities/SettingsUtils.py
	deleted:    api/scripts/utilities/UserUtils.py
	deleted:    api/scripts/utilities/__init__.py
	deleted:    api/serializers.py
	deleted:    api/signals.py
	deleted:    api/templates/api/account_activation_message.html
	deleted:    api/urls.py
	deleted:    api/validation_definitions/IEEE/2791object.json
	deleted:    api/validation_definitions/IEEE/description_domain.json
	deleted:    api/validation_definitions/IEEE/error_domain.json
	deleted:    api/validation_definitions/IEEE/execution_domain.json
	deleted:    api/validation_definitions/IEEE/io_domain.json
	deleted:    api/validation_definitions/IEEE/parametric_domain.json
	deleted:    api/validation_definitions/IEEE/provenance_domain.json
	deleted:    api/validation_definitions/IEEE/usability_domain.json
	deleted:    api/validation_definitions/IEEE_sub/IEEE2791-2020.schema
	deleted:    api/validation_definitions/IEEE_sub/domains/description_domain.json
	deleted:    api/validation_definitions/IEEE_sub/domains/error_domain.json
	deleted:    api/validation_definitions/IEEE_sub/domains/execution_domain.json
	deleted:    api/validation_definitions/IEEE_sub/domains/io_domain.json
	deleted:    api/validation_definitions/IEEE_sub/domains/parametric_domain.json
	deleted:    api/validation_definitions/IEEE_sub/domains/provenance_domain.json
	deleted:    api/validation_definitions/IEEE_sub/domains/usability_domain.json
	deleted:    api/validation_definitions/uri_external
	deleted:    api/views.py
	new file:   config/settings.py
	modified:   config/urls.py

Changes not staged for commit:
	modified:   authentication/apis.py
	modified:   authentication/migrations/0001_initial.py
	deleted:    authentication/migrations/0002_newuser.py
	modified:   authentication/services.py
	modified:   docs/refactor.md
	modified:   search/selectors.py
	modified:   tests/fixtures/test_data.json
	deleted:    tests/test_database.py
	deleted:    tests/test_fixtures.py
	deleted:    tests/test_models
	modified:   tests/test_views/test_api_account_activate.py
	deleted:    tests/test_views/test_api_accounts_describe.py
	modified:   tests/test_views/test_api_auth_add.py
	modified:   tests/test_views/test_api_auth_reset_token.py
	deleted:    tests/test_views/test_api_groups_group_info.py
	deleted:    tests/test_views/test_api_groups_modify.py
	deleted:    tests/test_views/test_api_objects.py
	deleted:    tests/test_views/test_api_objects_drafts_create.py
	deleted:    tests/test_views/test_api_objects_drafts_modify.py
	deleted:    tests/test_views/test_api_objects_drafts_publish.py
	deleted:    tests/test_views/test_api_objects_search.py
	deleted:    tests/test_views/test_api_objects_validate.py
	deleted:    tests/test_views/test_api_prefixes_create.py
	deleted:    tests/test_views/test_api_prefixes_token.py
	deleted:    tests/test_views/test_get_object_id_draft.py
	deleted:    tests/test_views/test_get_objectid.py
	deleted:    tests/test_views/test_published_object_by_id.py
	modified:   token.json

* Framework for BioCompute model

Changes to be committed:
	new file:   biocompute/__init__.py
	new file:   biocompute/admin.py
	new file:   biocompute/apis.py
	new file:   biocompute/migrations/__init__.py
	new file:   biocompute/models.py
	new file:   biocompute/selectors.py
	new file:   biocompute/services.py
	new file:   biocompute/urls.py

* Added files for Prefix model

Changes to be committed:
	new file:   prefix/__init__.py
	new file:   prefix/admin.py
	new file:   prefix/apis.py
	new file:   prefix/apps.py
	new file:   prefix/migrations/__init__.py
	new file:   prefix/models.py
	new file:   prefix/selectors.py
	new file:   prefix/services.py
	new file:   prefix/urls.py

* Tests for authentication

Changes to be committed:
	modified:   .gitignore
	modified:   authentication/apis.py
	modified:   authentication/migrations/0001_initial.py
	deleted:    authentication/migrations/0002_newuser.py
	modified:   authentication/services.py
	new file:   biocompute/migrations/0001_initial.py
	modified:   docs/refactor.md
	new file:   prefix/migrations/0001_initial.py
	modified:   search/selectors.py
	new file:   test.json
	new file:   tests/fixtures/old_test_data.json
	modified:   tests/fixtures/test_data.json
	deleted:    tests/test_database.py
	deleted:    tests/test_fixtures.py
	deleted:    tests/test_models
	modified:   tests/test_views/test_api_account_activate.py
	renamed:    tests/test_views/test_api_accounts_describe.py -> tests/test_views/test_api_account_describe.py
	modified:   tests/test_views/test_api_auth_add.py
	modified:   tests/test_views/test_api_auth_reset_token.py
	deleted:    tests/test_views/test_api_groups_group_info.py
	deleted:    tests/test_views/test_api_groups_modify.py
	deleted:    tests/test_views/test_api_objects.py
	deleted:    tests/test_views/test_api_objects_drafts_create.py
	deleted:    tests/test_views/test_api_objects_drafts_modify.py
	deleted:    tests/test_views/test_api_objects_drafts_publish.py
	deleted:    tests/test_views/test_api_objects_search.py
	deleted:    tests/test_views/test_api_objects_validate.py
	deleted:    tests/test_views/test_api_prefixes_create.py
	deleted:    tests/test_views/test_api_prefixes_token.py
	deleted:    tests/test_views/test_get_object_id_draft.py
	deleted:    tests/test_views/test_get_objectid.py
	deleted:    tests/test_views/test_published_object_by_id.py
	modified:   token.json

* Move Swagger files and implement BCO draft create

Changes to be committed:
	modified:   biocompute/apis.py
	modified:   biocompute/models.py
	modified:   biocompute/services.py
	modified:   biocompute/urls.py
	new file:   config/services.py
	modified:   config/urls.py
	modified:   docs/refactor.md
	modified:   prefix/urls.py
	new file:   tests/fixtures/example_bco.py
	new file:   tests/test_views/test_api_objects_drafts_create.py

* Doc fix in Bco.models
Changes to be committed:
	modified:   biocompute/models.py

* Updated biocompute.model and prefix.model

Added the DraftsCreateApi and tests.
This included serializers for BCO creation
Changes to be committed:
	modified:   biocompute/apis.py
	modified:   biocompute/services.py
	modified:   config/services.py
	modified:   prefix/models.py
	modified:   prefix/services.py
	modified:   test.json
	modified:   tests/fixtures/test_data.json
	new file:   tests/test_views/test_api_objects_drafts_create.py

* Implemented PrefixesCreateApi

Changes to be committed:
	modified:   biocompute/apis.py
	modified:   config/fixtures/local_data.json
	modified:   config/services.py
	modified:   config/urls.py
	modified:   prefix/apis.py
	modified:   prefix/services.py
	modified:   prefix/urls.py
	modified:   search/apis.py
	modified:   tests/test_views/test_api_auth_remove.py
	modified:   tests/test_views/test_api_objects_drafts_create.py
	new file:   tests/test_views/test_api_prefixes_create.py

* Added Prefix management URLs and APIs

Changes to be committed:
	modified:   config/fixtures/local_data.json
	modified:   docs/refactor.md
	modified:   prefix/apis.py
	modified:   prefix/services.py
	modified:   prefix/urls.py
	modified:   tests/fixtures/test_data.json
	deleted:    tests/test_views/test_api_prefixes_create.py
	new file:   tests/test_views/test_prefixes_create.py
	new file:   tests/test_views/test_prefixes_modify.py

* Cleaning up some things
Changes to be committed:
	modified:   biocompute/apis.py
	modified:   biocompute/migrations/0001_initial.py
	modified:   prefix/apis.py
	modified:   prefix/migrations/0001_initial.py
	new file:   tests/test_views/test_account_activate.py
	new file:   tests/test_views/test_account_describe.py
	new file:   tests/test_views/test_account_new.py
	new file:   tests/test_views/test_auth_add.py
	new file:   tests/test_views/test_auth_remove.py
	new file:   tests/test_views/test_auth_reset_token.py
	new file:   tests/test_views/test_objects_drafts_create.py

* Add prefix creation function
Changes to be committed:
	modified:   authentication/services.py
	modified:   biocompute/models.py
	modified:   config/settings.py
	modified:   docs/refactor.md
	modified:   prefix/apis.py
	modified:   prefix/models.py
	modified:   prefix/services.py
	modified:   tests/test_views/test_api_objects_drafts_create.py

* Add Prefix Modify API endpoint
On branch prefix_perms
Your branch is up to date with 'origin/prefix_perms'.

Changes to be committed:
	modified:   config/services.py
	modified:   prefix/apis.py
	modified:   prefix/models.py
	modified:   prefix/selectors.py
	modified:   prefix/services.py

* response_c

* Add `DraftRetrieveApi`

To do this functions related to Prefixes and the associated permissions were created

Changes to be committed:
	modified:   biocompute/apis.py
	modified:   biocompute/models.py
	modified:   biocompute/selectors.py
	modified:   biocompute/services.py
	modified:   biocompute/urls.py
	modified:   config/asgi.py
	modified:   config/fixtures/local_data.json
	modified:   config/services.py
	modified:   config/urls.py
	modified:   prefix/selectors.py
	modified:   prefix/services.py
	deleted:    test.json
	modified:   tests/fixtures/example_bco.py
	modified:   tests/fixtures/test_data.json
	deleted:    token.json

* Update testing functions

Created subdirectory and moved test functions
Changes to be committed:
	renamed:    tests/test_views/__init__.py -> tests/test_apis/__init__.py
	new file:   tests/test_apis/test_api_authentication/__init__.py
	renamed:    tests/test_views/test_account_activate.py -> tests/test_apis/test_api_authentication/test_account_activate.py
	renamed:    tests/test_views/test_account_describe.py -> tests/test_apis/test_api_authentication/test_account_describe.py
	renamed:    tests/test_views/test_account_new.py -> tests/test_apis/test_api_authentication/test_account_new.py
	renamed:    tests/test_views/test_api_auth_add.py -> tests/test_apis/test_api_authentication/test_api_auth_add.py
	renamed:    tests/test_views/test_api_auth_remove.py -> tests/test_apis/test_api_authentication/test_api_auth_remove.py
	renamed:    tests/test_views/test_api_auth_reset_token.py -> tests/test_apis/test_api_authentication/test_api_auth_reset_token.py
	renamed:    tests/test_views/test_api_objects_drafts_create.py -> tests/test_apis/test_api_objects_drafts_create.py
	renamed:    tests/test_views/test_auth_add.py -> tests/test_apis/test_auth_add.py
	renamed:    tests/test_views/test_auth_remove.py -> tests/test_apis/test_auth_remove.py
	renamed:    tests/test_views/test_auth_reset_token.py -> tests/test_apis/test_auth_reset_token.py
	renamed:    tests/test_views/test_objects_drafts_create.py -> tests/test_apis/test_objects_drafts_create.py
	renamed:    tests/test_views/test_prefixes_create.py -> tests/test_apis/test_prefixes_create.py
	new file:   tests/test_apis/test_prefixes_modify.py
	deleted:    tests/test_views/test_api_account_activate.py
	deleted:    tests/test_views/test_api_account_describe.py
	deleted:    tests/test_views/test_api_account_new.py
	deleted:    tests/test_views/test_prefixes_modify.py

* Add `DraftRetrieveApi`

To do this functions related to Prefixes and the associated permissions were created

Changes to be committed:
	modified:   biocompute/apis.py
	modified:   biocompute/models.py
	modified:   biocompute/selectors.py
	modified:   biocompute/services.py
	modified:   biocompute/urls.py
	modified:   config/asgi.py
	modified:   config/fixtures/local_data.json
	modified:   config/services.py
	modified:   config/urls.py
	modified:   prefix/selectors.py
	modified:   prefix/services.py
	deleted:    test.json
	modified:   tests/fixtures/example_bco.py
	modified:   tests/fixtures/test_data.json
	deleted:    token.json

* Update testing functions

Created subdirectory and moved test functions
Changes to be committed:
	renamed:    tests/test_views/__init__.py -> tests/test_apis/__init__.py
	new file:   tests/test_apis/test_api_authentication/__init__.py
	renamed:    tests/test_views/test_account_activate.py -> tests/test_apis/test_api_authentication/test_account_activate.py
	renamed:    tests/test_views/test_account_describe.py -> tests/test_apis/test_api_authentication/test_account_describe.py
	renamed:    tests/test_views/test_account_new.py -> tests/test_apis/test_api_authentication/test_account_new.py
	renamed:    tests/test_views/test_api_auth_add.py -> tests/test_apis/test_api_authentication/test_api_auth_add.py
	renamed:    tests/test_views/test_api_auth_remove.py -> tests/test_apis/test_api_authentication/test_api_auth_remove.py
	renamed:    tests/test_views/test_api_auth_reset_token.py -> tests/test_apis/test_api_authentication/test_api_auth_reset_token.py
	renamed:    tests/test_views/test_api_objects_drafts_create.py -> tests/test_apis/test_api_objects_drafts_create.py
	renamed:    tests/test_views/test_auth_add.py -> tests/test_apis/test_auth_add.py
	renamed:    tests/test_views/test_auth_remove.py -> tests/test_apis/test_auth_remove.py
	renamed:    tests/test_views/test_auth_reset_token.py -> tests/test_apis/test_auth_reset_token.py
	renamed:    tests/test_views/test_objects_drafts_create.py -> tests/test_apis/test_objects_drafts_create.py
	renamed:    tests/test_views/test_prefixes_create.py -> tests/test_apis/test_prefixes_create.py
	new file:   tests/test_apis/test_prefixes_modify.py
	deleted:    tests/test_views/test_api_account_activate.py
	deleted:    tests/test_views/test_api_account_describe.py
	deleted:    tests/test_views/test_api_account_new.py
	deleted:    tests/test_views/test_prefixes_modify.py

* Update to Test functions

Changes to be committed:
	modified:   biocompute/migrations/0001_initial.py
	modified:   docs/refactor.md
	modified:   prefix/apis.py
	modified:   prefix/migrations/0001_initial.py
	modified:   prefix/services.py
	new file:   tests/fixtures/bco_dump.json
	modified:   tests/fixtures/test_data.json
	deleted:    tests/test_apis/test_api_authentication/test_api_auth_add.py
	deleted:    tests/test_apis/test_api_authentication/test_api_auth_reset_token.py
	renamed:    tests/test_apis/test_auth_add.py -> tests/test_apis/test_api_authentication/test_auth_add.py
	renamed:    tests/test_apis/test_auth_reset_token.py -> tests/test_apis/test_api_authentication/test_auth_reset_token.py
	renamed:    tests/test_apis/test_api_authentication/test_api_auth_remove.py -> tests/test_apis/test_api_authentication/testi_auth_remove.py
	deleted:    tests/test_apis/test_api_objects_drafts_create.py
	new file:   tests/test_apis/test_api_prefix/__init__.py
	renamed:    tests/test_apis/test_prefixes_create.py -> tests/test_apis/test_api_prefix/test_prefixes_create.py
	renamed:    tests/test_apis/test_prefixes_modify.py -> tests/test_apis/test_api_prefix/test_prefixes_modify.py
	deleted:    tests/test_apis/test_auth_remove.py
	new file:   tests/test_apis/test_biocompute/__init__.py
	renamed:    tests/test_apis/test_objects_drafts_create.py -> tests/test_apis/test_biocompute/test_objects_drafts_create.py

* Bco perms (#293)

* Add `DraftRetrieveApi`

To do this functions related to Prefixes and the associated permissions were created

Changes to be committed:
	modified:   biocompute/apis.py
	modified:   biocompute/models.py
	modified:   biocompute/selectors.py
	modified:   biocompute/services.py
	modified:   biocompute/urls.py
	modified:   config/asgi.py
	modified:   config/fixtures/local_data.json
	modified:   config/services.py
	modified:   config/urls.py
	modified:   prefix/selectors.py
	modified:   prefix/services.py
	deleted:    test.json
	modified:   tests/fixtures/example_bco.py
	modified:   tests/fixtures/test_data.json
	deleted:    token.json

* Update testing functions

Created subdirectory and moved test functions
Changes to be committed:
	renamed:    tests/test_views/__init__.py -> tests/test_apis/__init__.py
	new file:   tests/test_apis/test_api_authentication/__init__.py
	renamed:    tests/test_views/test_account_activate.py -> tests/test_apis/test_api_authentication/test_account_activate.py
	renamed:    tests/test_views/test_account_describe.py -> tests/test_apis/test_api_authentication/test_account_describe.py
	renamed:    tests/test_views/test_account_new.py -> tests/test_apis/test_api_authentication/test_account_new.py
	renamed:    tests/test_views/test_api_auth_add.py -> tests/test_apis/test_api_authentication/test_api_auth_add.py
	renamed:    tests/test_views/test_api_auth_remove.py -> tests/test_apis/test_api_authentication/test_api_auth_remove.py
	renamed:    tests/test_views/test_api_auth_reset_token.py -> tests/test_apis/test_api_authentication/test_api_auth_reset_token.py
	renamed:    tests/test_views/test_api_objects_drafts_create.py -> tests/test_apis/test_api_objects_drafts_create.py
	renamed:    tests/test_views/test_auth_add.py -> tests/test_apis/test_auth_add.py
	renamed:    tests/test_views/test_auth_remove.py -> tests/test_apis/test_auth_remove.py
	renamed:    tests/test_views/test_auth_reset_token.py -> tests/test_apis/test_auth_reset_token.py
	renamed:    tests/test_views/test_objects_drafts_create.py -> tests/test_apis/test_objects_drafts_create.py
	renamed:    tests/test_views/test_prefixes_create.py -> tests/test_apis/test_prefixes_create.py
	new file:   tests/test_apis/test_prefixes_modify.py
	deleted:    tests/test_views/test_api_account_activate.py
	deleted:    tests/test_views/test_api_account_describe.py
	deleted:    tests/test_views/test_api_account_new.py
	deleted:    tests/test_views/test_prefixes_modify.py

* Update to Test functions

Changes to be committed:
	modified:   biocompute/migrations/0001_initial.py
	modified:   docs/refactor.md
	modified:   prefix/apis.py
	modified:   prefix/migrations/0001_initial.py
	modified:   prefix/services.py
	new file:   tests/fixtures/bco_dump.json
	modified:   tests/fixtures/test_data.json
	deleted:    tests/test_apis/test_api_authentication/test_api_auth_add.py
	deleted:    tests/test_apis/test_api_authentication/test_api_auth_reset_token.py
	renamed:    tests/test_apis/test_auth_add.py -> tests/test_apis/test_api_authentication/test_auth_add.py
	renamed:    tests/test_apis/test_auth_reset_token.py -> tests/test_apis/test_api_authentication/test_auth_reset_token.py
	renamed:    tests/test_apis/test_api_authentication/test_api_auth_remove.py -> tests/test_apis/test_api_authentication/testi_auth_remove.py
	deleted:    tests/test_apis/test_api_objects_drafts_create.py
	new file:   tests/test_apis/test_api_prefix/__init__.py
	renamed:    tests/test_apis/test_prefixes_create.py -> tests/test_apis/test_api_prefix/test_prefixes_create.py
	renamed:    tests/test_apis/test_prefixes_modify.py -> tests/test_apis/test_api_prefix/test_prefixes_modify.py
	deleted:    tests/test_apis/test_auth_remove.py
	new file:   tests/test_apis/test_biocompute/__init__.py
	renamed:    tests/test_apis/test_objects_drafts_create.py -> tests/test_apis/test_biocompute/test_objects_drafts_create.py

* Add `access_count` incrementer to DraftRetrieveApi

Changes to be committed:
	modified:   biocompute/apis.py
	modified:   biocompute/services.py
	modified:   prefix/services.py

* Added PublishedRetrieveApi class
Changes to be committed:
	modified:   biocompute/apis.py
	modified:   biocompute/selectors.py
	modified:   config/urls.py

* Update test DB and testing functions

Changes to be committed:
	modified:   config/fixtures/local_data.json
	modified:   tests/fixtures/test_data.json
	deleted:    tests/test_apis/test_api_objects_drafts_create.py
	deleted:    tests/test_apis/test_auth_add.py
	deleted:    tests/test_apis/test_auth_remove.py
	deleted:    tests/test_apis/test_auth_reset_token.py
	renamed:    tests/test_apis/test_objects_drafts_create.py -> tests/test_apis/test_biocompute/objects_drafts_create.py
	deleted:    tests/test_apis/test_prefixes_create.py
	deleted:    tests/test_apis/test_prefixes_modify.py

* Add DraftsModifyApi

Changes to be committed:
	modified:   biocompute/apis.py
	modified:   biocompute/selectors.py
	modified:   biocompute/services.py
	modified:   biocompute/urls.py
	modified:   prefix/selectors.py
	deleted:    tests/test_apis/test_biocompute/objects_drafts_create.py
	deleted:    tests/test_apis/test_biocompute/test_objects_drafts_create.py

* test for objects_drafts_create

Changes to be committed:
	new file:   tests/test_apis/test_biocompute/test_objects_drafts_create.py

* split("/")

* Publish draft (#308)

* Add DraftsModifyApi

Changes to be committed:
	modified:   biocompute/apis.py
	modified:   biocompute/selectors.py
	modified:   biocompute/services.py
	modified:   biocompute/urls.py
	modified:   prefix/selectors.py
	deleted:    tests/test_apis/test_biocompute/objects_drafts_create.py
	deleted:    tests/test_apis/test_biocompute/test_objects_drafts_create.py

* Add IEEE schema
Changes to be committed:
	new file:   .secrets
	new file:   config/IEEE/2791object.json
	new file:   config/IEEE/description_domain.json
	new file:   config/IEEE/error_domain.json
	new file:   config/IEEE/execution_domain.json
	new file:   config/IEEE/io_domain.json
	new file:   config/IEEE/parametric_domain.json
	new file:   config/IEEE/provenance_domain.json
	new file:   config/IEEE/usability_domain.json

* test_objects_drafts_create
Changes to be committed:
	new file:   tests/test_apis/test_biocompute/test_objects_drafts_create.py

* Fix test
Changes to be committed:
	modified:   tests/test_apis/test_biocompute/test_objects_drafts_create.py

* Enable publish bco endpoint

This included a great many supporting functions
and permission checks to accomplish. Also added
the validate functions to the codebase

Changes to be committed:
	modified:   biocompute/apis.py
	modified:   biocompute/selectors.py
	modified:   biocompute/services.py
	modified:   biocompute/urls.py
	modified:   config/services.py
	modified:   docs/refactor.md
	modified:   prefix/selectors.py
	new file:   tests/test_apis/test_biocompute/test_objects_drafts_publish.py

* Add BCO Score to model.

Also added functions and methods for BCO Score.
Updates to the BCO admin panel.
Updates to the `test_data.json` and `local_data.json`
Fix # 310
Changes to be committed:
	modified:   authentication/migrations/0001_initial.py
	modified:   biocompute/admin.py
	modified:   biocompute/apis.py
	modified:   biocompute/migrations/0001_initial.py
	modified:   biocompute/models.py
	modified:   biocompute/services.py
	new file:   config/bco_scores.py
	modified:   config/fixtures/local_data.json
	modified:   tests/fixtures/test_data.json

* Add BCODB search API endpoint.

Changes to be committed:
	modified:   biocompute/apis.py
	modified:   search/apis.py
	modified:   search/selectors.py
	modified:   search/urls.py

* Add POST search
Changes to be committed:
	modified:   authentication/apis.py
	modified:   search/apis.py

* Updated config file to `.secrets`

also updated accounts/describe
Changes to be committed:
	modified:   .gitignore
	new file:   .secrets.example
	modified:   authentication/selectors.py
	modified:   biocompute/apis.py
	modified:   biocompute/models.py
	modified:   biocompute/selectors.py
	modified:   config/settings.py
	deleted:    server.conf
	deleted:    sever.conf.example

* Fix config/urls.py error
Changes to be committed:
	deleted:    .secrets
	modified:   config/settings.py
	modified:   config/urls.py

* Refactor `config/services.py::response_constructor`
Changes to be committed:
	modified:   config/services.py
	modified:   tests/test_apis/test_api_prefix/test_prefixes_create.py

* Prefix registry (#318)

* Created test_objects_drafts_modify, hasn't passed test yet

* Created test_objects_drafts_modify, hasn't passed test yet

* Created test_objects_drafts_modify, hasn't passed test yet

* new tests

* Update modify_prefix permissions
Changes to be committed:
	modified:   authentication/selectors.py
	modified:   config/fixtures/local_data.json
	modified:   prefix/services.py

* Created and tested test_objects_drafts_modify API

* Fixes for Prefix creation

Changes to be committed:
	modified:   config/services.py
	modified:   prefix/apis.py
	modified:   tests/test_apis/test_api_prefix/test_prefixes_create.py

* Add UserSearch endpoint

Changes to be committed:
	modified:   prefix/apis.py
	modified:   prefix/selectors.py
	modified:   search/apis.py
	modified:   search/urls.py

* Fixes for deployment

 Changes to be committed:
	modified:   .secrets.example
	modified:   admin_only/bco_api.service
	modified:   biocompute/apis.py
	modified:   config/fixtures/test_portal.json
	modified:   config/settings.py
	modified:   tests/fixtures/test_data.json
	modified:   tests/test_apis/test_biocompute/test_objects_drafts_create.py

* test_objects_drafts_publish failed. Kicking back to Hadley for more investigation

* Update bco_api.conf

Changes to be committed:
	modified:   admin_only/bco_api.conf

---------

Co-authored-by: tianywan819 <[email protected]>
Co-authored-by: acoleman29 <[email protected]>

* Fixes for testing files

Changes to be committed:
	modified:   biocompute/apis.py
	modified:   biocompute/services.py
	modified:   config/bco_scores.py
	modified:   config/services.py
	modified:   config/settings.py
	modified:   config/urls.py
	modified:   tests/fixtures/test_data.json
	renamed:    tests/fixtures/example_bco.py -> tests/fixtures/testing_bcos.py
	modified:   tests/test_apis/test_api_prefix/test_prefixes_create.py
	modified:   tests/test_apis/test_biocompute/test_objects_drafts_modify.py
	modified:   tests/test_apis/test_biocompute/test_objects_drafts_publish.py

* "derrived_from": []

* fix test

* Add Validate url endpoint

Changes to be committed:
	modified:   biocompute/apis.py
	modified:   biocompute/urls.py
	modified:   tests/test_apis/test_biocompute/test_objects_drafts_create.py
	modified:   tests/test_apis/test_biocompute/test_objects_drafts_publish.py

* Update create test to include HOSTNAME

Changes to be committed:
	modified:   config/services.py
	modified:   tests/test_apis/test_biocompute/test_objects_drafts_create.py

* Rollback status for validation

Changes to be committed:
	modified:   biocompute/apis.py

* Changes to be committed:
	modified:   biocompute/apis.py

* Typo fix
Changes to be committed:
	modified:   biocompute/apis.py

* Add `test_portal.json` for testing

Changes to be committed:
	modified:   config/fixtures/test_portal.json

* Testing fixes

Changes to be committed:
	modified:   admin_only/bco_api.conf
	modified:   config/fixtures/test_portal.json

* Fix for draft publish

Changes to be committed:
	modified:   config/services.py

* Add new_bco_instance.save()

Changes to be committed:
	modified:   biocompute/services.py
	modified:   config/services.py

* CustomJSONWebTokenAuthentication for GET Pub BCO
Changes to be committed:
	modified:   biocompute/apis.py

* Updates to authentication.apis.py
Changes to be committed:
	modified:   authentication/apis.py
	modified:   authentication/services.py
	modified:   search/apis.py

* Updates to biocompute.apis.py

Changes to be committed:
	modified:   biocompute/apis.py
	modified:   biocompute/selectors.py
	modified:   search/apis.py
	modified:   tests/fixtures/testing_bcos.py
	modified:   tests/test_apis/test_biocompute/test_objects_drafts_create.py

* Remove print statements

Changes to be committed:
	modified:   authentication/apis.py
	modified:   authentication/services.py
	modified:   authentication/urls.py
	modified:   biocompute/apis.py
	modified:   biocompute/services.py
	modified:   config/urls.py
	modified:   prefix/services.py
	modified:   tests/test_apis/test_biocompute/test_objects_drafts_publish.py

* Updates to prefix.apis

Changes to be committed:
	modified:   prefix/apis.py

* print(

* change publish bco rejected response

On branch docs
Your branch is up to date with 'origin/docs'.

---------

Co-authored-by: tianywan819 <[email protected]>
Co-authored-by: acoleman29 <[email protected]>
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⚠️ GitGuardian has uncovered 3 secrets following the scan of your pull request.

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🔎 Detected hardcoded secrets in your pull request
GitGuardian id GitGuardian status Secret Commit Filename
4444555 Triggered Django Secret Key 2c4e0d2 bcodb/settings.py View secret
4444564 Triggered Generic High Entropy Secret 2c4e0d2 authentication/services.py View secret
4444557 Triggered Generic High Entropy Secret 2c4e0d2 api/views.py View secret
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