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major improvements of mzml statistics #37

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merged 24 commits into from
Nov 30, 2024
Merged

major improvements of mzml statistics #37

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1e141c3
improvements in speed in mzml stats
ypriverol Nov 27, 2024
58fc54b
Fixed ms2rescore bugs
daichengxin Nov 28, 2024
8d6bc7d
Update ms2rescore.py
daichengxin Nov 28, 2024
ad2ea80
Update ms2rescore.py
daichengxin Nov 28, 2024
6d285fc
Merge pull request #36 from daichengxin/dev
ypriverol Nov 29, 2024
ab91de8
Merge branch 'main' of https://github.com/bigbio/pyquantms into dev
ypriverol Nov 29, 2024
90ed8aa
Merge remote-tracking branch 'origin/dev' into dev
ypriverol Nov 29, 2024
8d3e0ad
improvements in speed in mzml stats
ypriverol Nov 29, 2024
5154daf
improve to streaming.
ypriverol Nov 30, 2024
db2f3b9
improve to streaming.
ypriverol Nov 30, 2024
9f9c82f
Update quantmsutils/mzml/mzml_statistics.py
ypriverol Nov 30, 2024
d64503d
improvements parsing .d
ypriverol Nov 30, 2024
04ba2a9
id_only move to batch writing.
ypriverol Nov 30, 2024
ddda856
id_only move to batch writing.
ypriverol Nov 30, 2024
5999bfb
id_only move to batch writing.
ypriverol Nov 30, 2024
5264eb8
improvements in speed in mzml stats
ypriverol Nov 29, 2024
3e4613c
Merge remote-tracking branch 'origin/dev' into dev
ypriverol Nov 30, 2024
dbfc89d
black applied.
ypriverol Nov 30, 2024
fe1739e
black applied.
ypriverol Nov 30, 2024
2ca002c
black applied.
ypriverol Nov 30, 2024
ce697c7
black applied.
ypriverol Nov 30, 2024
2b5cc7f
Apply suggestions from code review
jpfeuffer Nov 30, 2024
71784a6
black applied.
ypriverol Nov 30, 2024
4d3351f
black applied.
ypriverol Nov 30, 2024
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1 change: 1 addition & 0 deletions .gitignore
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Expand Up @@ -161,3 +161,4 @@ cython_debug/
*.csv
*_df.csv
*.tsv
/tests/test_data/hMICAL1_coiPAnP-N2-200_3Murea-1Mthiourea-200mMtcep_14733.d/
2 changes: 1 addition & 1 deletion pyproject.toml
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Expand Up @@ -3,7 +3,7 @@ name = "quantms-utils"
description = "Python scripts and helpers for the quantMS workflow"
readme = "README.md"
license = "MIT"
version = "0.0.15"
version = "0.0.16"
authors = [
"Yasset Perez-Riverol <[email protected]>",
"Dai Chengxin <[email protected]>",
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2 changes: 1 addition & 1 deletion quantmsutils/__init__.py
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@@ -1 +1 @@
__version__ = "0.0.15"
__version__ = "0.0.16"
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