Merge pull request #119 from bcgsc/init-cbf

Update CBFs for true counts in ntHits
bcgsc · Apr 6, 2024 · cc2581f · cc2581f
2 parents 837385a + 219ee2f
commit cc2581f
Show file tree

Hide file tree

Showing 248 changed files with 24,409 additions and 17,468 deletions.
diff --git a/docs/aahash_8hpp_source.html b/docs/aahash_8hpp_source.html
diff --git a/docs/annotated.html b/docs/annotated.html
diff --git a/docs/bloom__filter_8hpp_source.html b/docs/bloom__filter_8hpp_source.html
diff --git a/docs/classbtllib_1_1AAHash-members.html b/docs/classbtllib_1_1AAHash-members.html
@@ -1,26 +1,27 @@
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US">
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
 <head>
 <meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
-<meta http-equiv="X-UA-Compatible" content="IE=11"/>
-<meta name="generator" content="Doxygen 1.9.7"/>
-<meta name="viewport" content="width=device-width, initial-scale=1"/>
+<meta http-equiv="X-UA-Compatible" content="IE=9"/>
+<meta name="generator" content="Doxygen 1.8.5"/>
 <title>btllib: Member List</title>
 <link href="tabs.css" rel="stylesheet" type="text/css"/>
 <script type="text/javascript" src="jquery.js"></script>
 <script type="text/javascript" src="dynsections.js"></script>
 <link href="search/search.css" rel="stylesheet" type="text/css"/>
-<script type="text/javascript" src="search/searchdata.js"></script>
 <script type="text/javascript" src="search/search.js"></script>
+<script type="text/javascript">
+  $(document).ready(function() { searchBox.OnSelectItem(0); });
+</script>
 <link href="doxygen.css" rel="stylesheet" type="text/css" />
 </head>
 <body>
 <div id="top"><!-- do not remove this div, it is closed by doxygen! -->
 <div id="titlearea">
 <table cellspacing="0" cellpadding="0">
  <tbody>
- <tr id="projectrow">
-  <td id="projectalign">
+ <tr style="height: 56px;">
+  <td style="padding-left: 0.5em;">
    <div id="projectname">btllib
    </div>
   </td>
@@ -29,42 +30,54 @@
 </table>
 </div>
 <!-- end header part -->
-<!-- Generated by Doxygen 1.9.7 -->
-<script type="text/javascript">
-/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
-var searchBox = new SearchBox("searchBox", "search/",'.html');
-/* @license-end */
-</script>
-<script type="text/javascript" src="menudata.js"></script>
-<script type="text/javascript" src="menu.js"></script>
+<!-- Generated by Doxygen 1.8.5 -->
 <script type="text/javascript">
-/* @license magnet:?xt=urn:btih:d3d9a9a6595521f9666a5e94cc830dab83b65699&amp;dn=expat.txt MIT */
-$(function() {
-  initMenu('',true,false,'search.php','Search');
-  $(document).ready(function() { init_search(); });
-});
-/* @license-end */
+var searchBox = new SearchBox("searchBox", "search",false,'Search');
 </script>
-<div id="main-nav"></div>
+  <div id="navrow1" class="tabs">
+    <ul class="tablist">
+      <li><a href="index.html"><span>Main&#160;Page</span></a></li>
+      <li><a href="namespaces.html"><span>Namespaces</span></a></li>
+      <li class="current"><a href="annotated.html"><span>Classes</span></a></li>
+      <li><a href="files.html"><span>Files</span></a></li>
+      <li><a href="examples.html"><span>Examples</span></a></li>
+      <li>
+        <div id="MSearchBox" class="MSearchBoxInactive">
+        <span class="left">
+          <img id="MSearchSelect" src="search/mag_sel.png"
+               onmouseover="return searchBox.OnSearchSelectShow()"
+               onmouseout="return searchBox.OnSearchSelectHide()"
+               alt=""/>
+          <input type="text" id="MSearchField" value="Search" accesskey="S"
+               onfocus="searchBox.OnSearchFieldFocus(true)" 
+               onblur="searchBox.OnSearchFieldFocus(false)" 
+               onkeyup="searchBox.OnSearchFieldChange(event)"/>
+          </span><span class="right">
+            <a id="MSearchClose" href="javascript:searchBox.CloseResultsWindow()"><img id="MSearchCloseImg" border="0" src="search/close.png" alt=""/></a>
+          </span>
+        </div>
+      </li>
+    </ul>
+  </div>
+  <div id="navrow2" class="tabs2">
+    <ul class="tablist">
+      <li><a href="annotated.html"><span>Class&#160;List</span></a></li>
+      <li><a href="classes.html"><span>Class&#160;Index</span></a></li>
+      <li><a href="functions.html"><span>Class&#160;Members</span></a></li>
+    </ul>
+  </div>
 <!-- window showing the filter options -->
 <div id="MSearchSelectWindow"
      onmouseover="return searchBox.OnSearchSelectShow()"
      onmouseout="return searchBox.OnSearchSelectHide()"
      onkeydown="return searchBox.OnSearchSelectKey(event)">
-</div>
+<a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(0)"><span class="SelectionMark">&#160;</span>All</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(1)"><span class="SelectionMark">&#160;</span>Classes</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(2)"><span class="SelectionMark">&#160;</span>Namespaces</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(3)"><span class="SelectionMark">&#160;</span>Functions</a><a class="SelectItem" href="javascript:void(0)" onclick="searchBox.OnSelectItem(4)"><span class="SelectionMark">&#160;</span>Variables</a></div>
 
 <!-- iframe showing the search results (closed by default) -->
 <div id="MSearchResultsWindow">
-<div id="MSearchResults">
-<div class="SRPage">
-<div id="SRIndex">
-<div id="SRResults"></div>
-<div class="SRStatus" id="Loading">Loading...</div>
-<div class="SRStatus" id="Searching">Searching...</div>
-<div class="SRStatus" id="NoMatches">No Matches</div>
-</div>
-</div>
-</div>
+<iframe src="javascript:void(0)" frameborder="0" 
+        name="MSearchResults" id="MSearchResults">
+</iframe>
 </div>
 
 <div id="nav-path" class="navpath">
@@ -73,28 +86,31 @@
 </div>
 </div><!-- top -->
 <div class="header">
-  <div class="headertitle"><div class="title">btllib::AAHash Member List</div></div>
+  <div class="headertitle">
+<div class="title">btllib::AAHash Member List</div>  </div>
 </div><!--header-->
 <div class="contents">
 
 <p>This is the complete list of members for <a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a>, including all inherited members.</p>
 <table class="directory">
   <tr class="even"><td class="entry"><a class="el" href="classbtllib_1_1AAHash.html#a2edba2dba416e5913a9867fec2fd5444">AAHash</a>(std::string_view seq, uint8_t hash_num, uint16_t k, unsigned level, size_t pos=0)</td><td class="entry"><a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr bgcolor="#f0f0f0" class="odd"><td class="entry"><b>AAHash</b>(const AAHash &amp;aahash) (defined in <a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a>)</td><td class="entry"><a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>AAHash</b>(const AAHash &amp;aahash) (defined in <a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a>)</td><td class="entry"><a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
   <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>AAHash</b>(AAHash &amp;&amp;)=default (defined in <a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a>)</td><td class="entry"><a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="odd"><td class="entry"><b>get_forward_hash</b>() const (defined in <a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a>)</td><td class="entry"><a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_hash_num</b>() const (defined in <a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a>)</td><td class="entry"><a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr bgcolor="#f0f0f0" class="odd"><td class="entry"><b>get_k</b>() const (defined in <a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a>)</td><td class="entry"><a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_level</b>() const (defined in <a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a>)</td><td class="entry"><a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr bgcolor="#f0f0f0" class="odd"><td class="entry"><b>get_pos</b>() const (defined in <a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a>)</td><td class="entry"><a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_seq</b>() const (defined in <a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a>)</td><td class="entry"><a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
-  <tr bgcolor="#f0f0f0" class="odd"><td class="entry"><b>hashes</b>() const (defined in <a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a>)</td><td class="entry"><a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_forward_hash</b>() const  (defined in <a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a>)</td><td class="entry"><a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_hash_num</b>() const  (defined in <a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a>)</td><td class="entry"><a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_k</b>() const  (defined in <a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a>)</td><td class="entry"><a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_level</b>() const  (defined in <a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a>)</td><td class="entry"><a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>get_pos</b>() const  (defined in <a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a>)</td><td class="entry"><a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>get_seq</b>() const  (defined in <a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a>)</td><td class="entry"><a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>hashes</b>() const  (defined in <a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a>)</td><td class="entry"><a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
   <tr class="even"><td class="entry"><a class="el" href="classbtllib_1_1AAHash.html#a94a48eac3e812204810c3182f55b122f">roll</a>()</td><td class="entry"><a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a></td><td class="entry"></td></tr>
-  <tr bgcolor="#f0f0f0" class="odd"><td class="entry"><b>SeedAAHash</b> (defined in <a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a>)</td><td class="entry"><a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
+  <tr bgcolor="#f0f0f0"><td class="entry"><b>SeedAAHash</b> (defined in <a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a>)</td><td class="entry"><a class="el" href="classbtllib_1_1AAHash.html">btllib::AAHash</a></td><td class="entry"><span class="mlabel">friend</span></td></tr>
 </table></div><!-- contents -->
 <!-- start footer part -->
 <hr class="footer"/><address class="footer"><small>
-Generated by&#160;<a href="https://www.doxygen.org/index.html"><img class="footer" src="doxygen.svg" width="104" height="31" alt="doxygen"/></a> 1.9.7
+Generated by &#160;<a href="http://www.doxygen.org/index.html">
+<img class="footer" src="doxygen.png" alt="doxygen"/>
+</a> 1.8.5
 </small></address>
 </body>
 </html>