update: fix some issues

bbglab · Dec 14, 2024 · 7a82af1 · 7a82af1
1 parent 7520dfa
commit 7a82af1
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Showing 2 changed files with 7 additions and 2 deletions.
diff --git a/openvariant/variant/variant.py b/openvariant/variant/variant.py
@@ -94,6 +94,12 @@ def _extract_header(file_path: str, original_header: list, annotation: Annotatio
 
     for field, ann in mapping_fields:
         ann_type = ann[0]
+
+        class_name = ann_type
+        module_name = "openvariant.annotation.process"
+        ClassAnnotation = import_class_from_module(module_name, class_name)
+        instance = ClassAnnotation()
+
         header_schema.update({field: instance(ann, original_header, file_path, header_schema)})
     return header_schema, annotation.columns
 

diff --git a/pyproject.toml b/pyproject.toml
@@ -24,10 +24,9 @@ keywords = ["bioinformatics", "openvariant", "openvar", "bbglab"]
 
 [project.urls]
 Homepage = "https://github.com/bbglab/openvariant"
-Documentation = "https://readthedocs.org"
+Documentation = "https://openvariant.readthedocs.io/"
 Repository = "https://github.com/bbglab/openvariant"
 Issues = "https://github.com/bbglab/openvariant/issues"
-Changelog = "https://github.com/me/spam/blob/master/CHANGELOG.md"
 
 
 [project.scripts]