update to new ipd crud system, apply new formatting #1
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| name: run pytest on digs with slurm | |
| on: | |
| pull_request: | |
| branches: [ "main" ] | |
| permissions: | |
| contents: read | |
| jobs: | |
| test: | |
| runs-on: [self-hosted, Linux, X64, digs] | |
| steps: | |
| - name: checkout | |
| uses: actions/checkout@v4 | |
| - name: setup | |
| run: | | |
| ipd update | |
| ipd ci update_library | |
| ipd ci repo setup_submodules | |
| - name: run ruff | |
| run: | | |
| ipd ci tests ruff ipd | |
| - name: run pytest digs | |
| run: | | |
| ipd ci tests pytest --exe /home/bench/.conda/envs/ci/bin/python | |
| - name: check test results | |
| run: | | |
| ipd ci tests check | |
| # - name: build docs | |
| # run: | | |
| # export LC_ALL=C | |
| # cd doc | |
| # rm -rf source/api | |
| # export PYTHON=../rf_diffusion/exec/bakerlab_rf_diffusion_aa.sif | |
| # export PYTHONPATH=..:../rf_diffusion:../rf2aa:../lib/rf2aa/rf2aa/SE3Transformer | |
| # $PYTHON -m sphinx.ext.apidoc -o source/api ../rf_diffusion | |
| # $PYTHON -m sphinx.ext.apidoc -o source/api ../rf2aa | |
| # $PYTHON -m sphinx.cmd.build -M html source build | |
| # prnum=$(git branch | cut -b 26-28) | |
| # mkdir -p $HOME/public/rf_diffusion/$prnum/ | |
| # rsync -a build/html/ $HOME/public/rf_diffusion/$prnum/ |