Update top level environment

bacpop · May 6, 2024 · a094186 · a094186
1 parent 4012c2f
commit a094186
Showing 1 changed file with 12 additions and 5 deletions.
diff --git a/environment.yml b/environment.yml
@@ -5,13 +5,20 @@ channels:
   - defaults
   - r
 dependencies:
-  - python
-  - numpy
+  - python >=3.7
+  - numpy >=1.18
   - iqtree >=2.0.3
   - rapidnj >=v2.3.2
-  - ete3 >=3.1
-  - ska >=1.0
+  - ete3 >=3.1.2
+  - ska2 =0.3.0
   - pp-sketchlib >=2.0.0
   - poppunk >=2.3.0
-  - r-fastbaps >=1.0.3
+  - r-base
+  - r-fastbaps =1.0.5
   - mandrake >=1.2.1
+  - gubbins >= 3.1.0
+  - r-transphylo
+  - r-bactdating
+  - r-ape
+  - r-optparse
+  - r-fs