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This PR contains the following updates:

| Package | Type | Update | Change |
|---|---|---|---|
| [paddyroddy/.github](https://togithub.com/paddyroddy/.github) |
repository | minor | `v0.157.0` -> `v0.163.0` |
| [paddyroddy/.github](https://togithub.com/paddyroddy/.github) | action
| digest | `be31e8f` -> `f8793be` |

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---

### Release Notes

<details>
<summary>paddyroddy/.github (paddyroddy/.github)</summary>

###
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---

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---

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---

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Co-authored-by: renovate[bot] <29139614+renovate[bot]@users.noreply.github.com>
Co-authored-by: Patrick J. Roddy <[email protected]>
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4 changes: 2 additions & 2 deletions .github/ISSUE_TEMPLATE/bug_report.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -40,8 +40,8 @@ body:
attributes:
label: Actual Behaviour
description: >-
Be a specific and detailed as you can.
Paste any output or stack traces of errors you receive.
Be a specific and detailed as you can. Paste any output or stack traces
of errors you receive.
validations:
required: true
- id: version
Expand Down
4 changes: 2 additions & 2 deletions .github/ISSUE_TEMPLATE/documentation.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -25,5 +25,5 @@ body:
attributes:
label: How to Improve This Section
description: >-
Do you have any specific suggestions we
could take to improve the documentation?
Do you have any specific suggestions we could take to improve the
documentation?
4 changes: 2 additions & 2 deletions .github/ISSUE_TEMPLATE/feature_request.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -26,8 +26,8 @@ body:
attributes:
label: Describe Alternatives You've Considered
description: >-
A clear and concise description of any alternative
solutions or features you've considered.
A clear and concise description of any alternative solutions or features
you've considered.
- id: additional
type: textarea
attributes:
Expand Down
2 changes: 1 addition & 1 deletion .github/workflows/deploy.yaml
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Expand Up @@ -13,7 +13,7 @@ jobs:
id-token: write
steps:
# yamllint disable-line rule:line-length
- uses: paddyroddy/.github/actions/python/deployment@be31e8f5758700dafb58c5852530e750f1ea69d8 # v0
- uses: paddyroddy/.github/actions/python/deployment@f8793becd1b97caa5b40ebc7556b21d9a272d700 # v0
with:
pyproject-toml: ./pyproject.toml
python-version: "3.11"
2 changes: 1 addition & 1 deletion .github/workflows/documentation.yaml
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Expand Up @@ -11,7 +11,7 @@ jobs:
runs-on: ubuntu-latest
steps:
# yamllint disable-line rule:line-length
- uses: paddyroddy/.github/actions/python/pdoc@be31e8f5758700dafb58c5852530e750f1ea69d8 # v0
- uses: paddyroddy/.github/actions/python/pdoc@f8793becd1b97caa5b40ebc7556b21d9a272d700 # v0
with:
docs-dependency-section: .[docs]
gh-pages-publish-directory: ./html/sleplet
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7 changes: 2 additions & 5 deletions .github/workflows/examples.yaml
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Expand Up @@ -63,8 +63,5 @@ jobs:

- name: Run examples in the examples folder
run: >-
find examples -name "*.py"
-exec sh -c 'for f;
do printf "\n$f\n";
python "$f" || exit 1;
done' sh {} +
find examples -name "*.py" -exec sh -c 'for f; do printf "\n$f\n";
python "$f" || exit 1; done' sh {} +
2 changes: 1 addition & 1 deletion .github/workflows/licence.yaml
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Expand Up @@ -10,7 +10,7 @@ jobs:
runs-on: ubuntu-latest
steps:
# yamllint disable-line rule:line-length
- uses: paddyroddy/.github/actions/licence@be31e8f5758700dafb58c5852530e750f1ea69d8 # v0
- uses: paddyroddy/.github/actions/licence@f8793becd1b97caa5b40ebc7556b21d9a272d700 # v0
with:
github-token: ${{ secrets.GITHUB_TOKEN }}
licence-file: ./LICENCE.txt
2 changes: 1 addition & 1 deletion .github/workflows/linting.yaml
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Expand Up @@ -13,6 +13,6 @@ jobs:
runs-on: ubuntu-latest
steps:
# yamllint disable-line rule:line-length
- uses: paddyroddy/.github/actions/linting@be31e8f5758700dafb58c5852530e750f1ea69d8 # v0
- uses: paddyroddy/.github/actions/linting@f8793becd1b97caa5b40ebc7556b21d9a272d700 # v0
with:
pre-commit-config: ./.pre-commit-config.yaml
2 changes: 1 addition & 1 deletion .github/workflows/test.yaml
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Expand Up @@ -23,7 +23,7 @@ jobs:
- "3.11"
steps:
# yamllint disable-line rule:line-length
- uses: paddyroddy/.github/actions/python/tox@be31e8f5758700dafb58c5852530e750f1ea69d8 # v0
- uses: paddyroddy/.github/actions/python/tox@f8793becd1b97caa5b40ebc7556b21d9a272d700 # v0
with:
cache-path: |-
.tox
Expand Down
2 changes: 1 addition & 1 deletion .pre-commit-config.yaml
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
---
repos:
- repo: https://github.com/paddyroddy/.github
rev: v0.157.0
rev: v0.163.0
hooks:
- id: general-hooks
- id: python-hooks
4 changes: 2 additions & 2 deletions CITATION.cff
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Expand Up @@ -5,8 +5,8 @@ authors:
orcid: https://orcid.org/0000-0002-6271-1700
doi: 10.5281/zenodo.7268074
message: >-
If you use this software, please cite our article in the
Journal of Open Source Software.
If you use this software, please cite our article in the Journal of Open
Source Software.
preferred-citation:
authors:
- family-names: Roddy
Expand Down
36 changes: 18 additions & 18 deletions CODE_OF_CONDUCT.md
Original file line number Diff line number Diff line change
Expand Up @@ -6,8 +6,8 @@ We as members, contributors, and leaders pledge to make participation in our
community a harassment-free experience for everyone, regardless of age, body
size, visible or invisible disability, ethnicity, sex characteristics, gender
identity and expression, level of experience, education, socio-economic status,
nationality, personal appearance, race, religion, or sexual identity
and orientation.
nationality, personal appearance, race, religion, or sexual identity and
orientation.

We pledge to act and interact in ways that contribute to an open, welcoming,
diverse, inclusive, and healthy community.
Expand All @@ -22,17 +22,17 @@ community include:
- Giving and gracefully accepting constructive feedback
- Accepting responsibility and apologizing to those affected by our mistakes,
and learning from the experience
- Focusing on what is best not just for us as individuals, but for the
overall community
- Focusing on what is best not just for us as individuals, but for the overall
community

Examples of unacceptable behavior include:

- The use of sexualized language or imagery, and sexual attention or
advances of any kind
- The use of sexualized language or imagery, and sexual attention or advances of
any kind
- Trolling, insulting or derogatory comments, and personal or political attacks
- Public or private harassment
- Publishing others' private information, such as a physical or email
address, without their explicit permission
- Publishing others' private information, such as a physical or email address,
without their explicit permission
- Other conduct which could reasonably be considered inappropriate in a
professional setting

Expand Down Expand Up @@ -60,8 +60,8 @@ representative at an online or offline event.

Instances of abusive, harassing, or otherwise unacceptable behavior may be
reported to the community leaders responsible for enforcement at
<[email protected]>.
All complaints will be reviewed and investigated promptly and fairly.
<[email protected]>. All complaints will be reviewed and investigated
promptly and fairly.

All community leaders are obligated to respect the privacy and security of the
reporter of any incident.
Expand All @@ -82,15 +82,15 @@ behavior was inappropriate. A public apology may be requested.

### 2. Warning

**Community Impact**: A violation through a single incident or series
of actions.
**Community Impact**: A violation through a single incident or series of
actions.

**Consequence**: A warning with consequences for continued behavior. No
interaction with the people involved, including unsolicited interaction with
those enforcing the Code of Conduct, for a specified period of time. This
includes avoiding interactions in community spaces as well as external channels
like social media. Violating these terms may lead to a temporary or
permanent ban.
like social media. Violating these terms may lead to a temporary or permanent
ban.

### 3. Temporary Ban

Expand All @@ -109,17 +109,17 @@ Violating these terms may lead to a permanent ban.
standards, including sustained inappropriate behavior, harassment of an
individual, or aggression toward or disparagement of classes of individuals.

**Consequence**: A permanent ban from any sort of public interaction within
the community.
**Consequence**: A permanent ban from any sort of public interaction within the
community.

## Attribution

This Code of Conduct is adapted from the [Contributor Covenant][homepage],
version 2.0, available at
<https://www.contributor-covenant.org/version/2/0/code_of_conduct.html>.

Community Impact Guidelines were inspired by [Mozilla's code of conduct
enforcement ladder](https://github.com/mozilla/diversity).
Community Impact Guidelines were inspired by
[Mozilla's code of conduct enforcement ladder](https://github.com/mozilla/diversity).

[homepage]: https://www.contributor-covenant.org

Expand Down
39 changes: 21 additions & 18 deletions CONTRIBUTING.md
Original file line number Diff line number Diff line change
Expand Up @@ -67,7 +67,8 @@ steps in advance to help us fix any potential bug as fast as possible.
- Determine if your bug is really a bug and not an error on your side e.g. using
incompatible environment components/versions (Make sure that you have read the
[documentation](https://astro-informatics.github.io/sleplet). If you are
looking for support, you might want to check [this section](#i-have-a-question)).
looking for support, you might want to check
[this section](#i-have-a-question)).
- To see if other users have experienced (and potentially already solved) the
same issue you are having, check if there is not already a bug report existing
for your bug or error in the
Expand All @@ -87,38 +88,39 @@ steps in advance to help us fix any potential bug as fast as possible.

> You must never report security related issues, vulnerabilities or bugs
> including sensitive information to the issue tracker, or elsewhere in public.
> Instead, sensitive bugs must be sent by email to <[email protected]>.
> Instead, sensitive bugs must be sent by email to
> <[email protected]>.
We use GitHub issues to track bugs and errors. If you run into an issue with the
project:

- Open an [Issue](https://github.com/astro-informatics/sleplet/issues/new).
(Since we can't be sure at this point whether it is a bug or not, we ask you not
to talk about a bug yet and not to label the issue.)
(Since we can't be sure at this point whether it is a bug or not, we ask you
not to talk about a bug yet and not to label the issue.)
- Explain the behaviour you would expect and the actual behaviour.
- Please provide as much context as possible and describe the _reproduction_
_steps_ that someone else can follow to recreate the issue on their own. This
usually includes your code. For good bug reports you should isolate the problem
and create a reduced test case.
usually includes your code. For good bug reports you should isolate the
problem and create a reduced test case.
- Provide the information you collected in the previous section.

Once it's filed:

- The project team will label the issue accordingly.
- A team member will try to reproduce the issue with your provided steps. If
there are no reproduction steps or no obvious way to reproduce the issue, the
team will ask you for those steps and mark the issue as `needs-repro`. Bugs with
the `needs-repro` tag will not be addressed until they are reproduced.
team will ask you for those steps and mark the issue as `needs-repro`. Bugs
with the `needs-repro` tag will not be addressed until they are reproduced.
- If the team is able to reproduce the issue, it will be marked `needs-fix`, as
well as possibly other tags (such as `critical`), and the issue will be left to
be implemented by someone.
well as possibly other tags (such as `critical`), and the issue will be left
to be implemented by someone.

### Suggesting Enhancements

This section guides you through submitting an enhancement suggestion for `SLEPLET`,
**including completely new features and minor improvements to existing**
**functionality**. Following these guidelines will help maintainers and the
community to understand your suggestion and find related suggestions.
This section guides you through submitting an enhancement suggestion for
`SLEPLET`, **including completely new features and minor improvements to
existing** **functionality**. Following these guidelines will help maintainers
and the community to understand your suggestion and find related suggestions.

#### Before Submitting an Enhancement

Expand All @@ -140,12 +142,13 @@ community to understand your suggestion and find related suggestions.
Enhancement suggestions are tracked as
[GitHub issues](https://github.com/astro-informatics/sleplet/issues).

- Use a **clear and descriptive title** for the issue to identify the suggestion.
- Use a **clear and descriptive title** for the issue to identify the
suggestion.
- Provide a **step-by-step description of the suggested enhancement** in as many
details as possible.
- **Describe the current behaviour** and **explain which behaviour you expected**
**to see instead** and why. At this point you can also tell which alternatives
do not work for you.
- **Describe the current behaviour** and **explain which behaviour you
expected** **to see instead** and why. At this point you can also tell which
alternatives do not work for you.
- **Explain why this enhancement would be useful** to most `SLEPLET` users. You
may also want to point out the other projects that solved it better and which
could serve as inspiration.
16 changes: 8 additions & 8 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -35,8 +35,8 @@ The recommended way to install `SLEPLET` is via
pip install sleplet
```

To install the latest development version of `SLEPLET` clone this repository
and run
To install the latest development version of `SLEPLET` clone this repository and
run

```sh
pip install -e .
Expand All @@ -52,11 +52,11 @@ the figures in
[![Python](https://img.shields.io/pypi/pyversions/sleplet)](https://www.python.org).
Windows is not currently supported as `SLEPLET` relies on
[pyssht](https://pypi.org/project/pyssht) and
[pys2let](https://pypi.org/project/pys2let) which do not work on Windows.
These can hopefully be replaced with
[pys2let](https://pypi.org/project/pys2let) which do not work on Windows. These
can hopefully be replaced with
[s2fft](https://github.com/astro-informatics/s2fft) and
[s2wav](https://github.com/astro-informatics/s2wav) in the future when they
are available on [PyPI](https://pypi.org).
[s2wav](https://github.com/astro-informatics/s2wav) in the future when they are
available on [PyPI](https://pypi.org).

## Example Usage

Expand Down Expand Up @@ -128,5 +128,5 @@ If you use `SLEPLET` in your research, please cite the paper.

Please also cite [S2LET](https://doi.org/10.1051/0004-6361/201220729) upon which
`SLEPLET` is built, along with [SSHT](https://doi.org/10.1109/TSP.2011.2166394)
in the spherical setting or [libigl](https://doi.org/10.1145/3134472.3134497)
in the mesh setting.
in the spherical setting or [libigl](https://doi.org/10.1145/3134472.3134497) in
the mesh setting.
16 changes: 8 additions & 8 deletions documentation/DOCUMENTATION.md
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Expand Up @@ -17,20 +17,20 @@ predictions.
Slepian wavelets are built upon the eigenfunctions of the Slepian concentration
problem of the manifold - a set of bandlimited functions which are maximally
concentrated within a given region. Wavelets are constructed through a tiling of
the Slepian harmonic line by leveraging the existing scale-discretised framework.
A straightforward denoising formalism demonstrates a boost in signal-to-noise
for both a spherical and general manifold example. Whilst these wavelets were
inspired by spherical datasets, like in cosmology, the wavelet construction may
be utilised for manifold or graph data.
the Slepian harmonic line by leveraging the existing scale-discretised
framework. A straightforward denoising formalism demonstrates a boost in
signal-to-noise for both a spherical and general manifold example. Whilst these
wavelets were inspired by spherical datasets, like in cosmology, the wavelet
construction may be utilised for manifold or graph data.

## Bandlimit

The bandlimit is set as `L` throughout the code and the CLIs. The default value
is set to `L=16` and the figures created in [the figure section](#paper-figures)
all use `L=128`. The pre-computed data exists on
[Zenodo](https://doi.org/10.5281/zenodo.7767698) for powers of two up to `L=128`.
Other values will be computed when running the appropriate code (and saved for
future use). Note that beyond `L=32` the code can be slow due to the
[Zenodo](https://doi.org/10.5281/zenodo.7767698) for powers of two up to
`L=128`. Other values will be computed when running the appropriate code (and
saved for future use). Note that beyond `L=32` the code can be slow due to the
difficulties of computing the Slepian matrix prior to the eigendecomposition, as
such it is recommended to stick to the powers of two up to `L=128`.

Expand Down
4 changes: 2 additions & 2 deletions paper/paper.md
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Expand Up @@ -74,8 +74,8 @@ convert these into real space for visualisation or other intended purposes. The
construction of the sifting convolution [@Roddy2021] was required to create
Slepian wavelets. As a result, there are also many examples of functions on the
sphere in harmonic space (rather than Slepian) that were used to demonstrate its
effectiveness. `SLEPLET` has been used in the development of
[@Roddy2021; @Roddy2022; @Roddy2022a; @Roddy2023].
effectiveness. `SLEPLET` has been used in the development of [@Roddy2021;
@Roddy2022; @Roddy2022a; @Roddy2023].

Whilst Slepian wavelets may be trivially computed from a set of Slepian
functions, the computation of the spherical Slepian functions themselves are
Expand Down

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