Add missing shell specification for mamba installation of doxygen

Fix installation of docs in nested directory
Add installation of docs to run script

.github/workflows/test-suite.yml

@@ -251,10 +251,12 @@ jobs:
           use-mamba: true
       - name: Install doxgen on unix systems
         if: matrix.os != 'windows-latest' && matrix.python-install == 'conda'
+        shell: bash -l {0}
         run: |
           mamba install doxygen>=1.9.2 graphviz -y
       - name: Install LLVM on mac for OpenMP
         if: matrix.os == 'macos-latest' && matrix.python-install == 'conda'
+        # shell: bash -l {0}
         run: |
           mamba install llvm -y
       - name: Install compilers using conda on Linux/Mac

CMakeLists.txt

@@ -258,7 +258,7 @@ if(YGG_BUILD_DOCS)
                           COMMAND ${DOXYGEN_EXECUTABLE} ${CMAKE_CURRENT_BINARY_DIR}/Doxyfile
                           WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
                           VERBATIM)
-        install(DIRECTORY ${DOXYGEN_BUILD_DIR}
+        install(DIRECTORY ${DOXYGEN_BUILD_DIR}/
                 DESTINATION ${CMAKE_INSTALL_PREFIX}/share/doc/ygginterrfacecpp
                 OPTIONAL)
     endif()

run_tests.sh

@@ -132,8 +132,6 @@ while [[ $# -gt 0 ]]; do
 	    DO_DOCS="TRUE"
 	    DONT_TEST="TRUE"
 	    DONT_BUILD="TRUE"
-	    # BUILD_FLAGS="${BUILD_FLAGS} --target docs"
-	    # CMAKE_FLAGS="${CMAKE_FLAGS} -DYGG_BUILD_DOCS=ON"
 	    shift
 	    ;;
 	--speed )
@@ -386,9 +384,8 @@ if [ -n "$DO_DOCS" ] && [ -x "$path_to_doxygen" ]; then
     fi
     cd build
     cmake .. $CMAKE_FLAGS -DYGG_BUILD_DOCS=ON -DBUILD_CPP_LIBRARY=OFF -DBUILD_FORTRAN_LIBRARY=OFF
-    cmake --build . --target docs
-    # cmake --build . $CONFIG_FLAGS --target docs
+    cmake --build . $CONFIG_FLAGS --target docs
     # Need install here to ensure that cmake config files are in place
-    # cmake --install . --prefix "$INSTALL_DIR" $CONFIG_FLAGS
+    cmake --install . --prefix "$INSTALL_DIR" $CONFIG_FLAGS
     cd ..
 fi