Try disabling mingw threads patch #95
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Test of package installation & execution | |
| 'on': | |
| push: | |
| branches-ignore: | |
| - gh-pages | |
| tags: | |
| - '*' | |
| schedule: | |
| - cron: 0 10 * * 1 | |
| jobs: | |
| build_cpp: | |
| runs-on: ${{ matrix.os }} | |
| # services: | |
| # rabbitmq: | |
| # image: rabbitmq:latest | |
| # ports: | |
| # - 5672:5672 | |
| # options: --health-cmd "rabbitmqctl node_health_check" --health-interval 10s --health-timeout 5s --health-retries 5 | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-install: [pip, conda] | |
| install-zmq: [true, false] | |
| install-mpi: [true] | |
| install-rmq: [true] | |
| with-coverage: [false, true] | |
| with-asan: [false] | |
| with-elf: [false] | |
| with-valgrind: [false] | |
| windows-compiler: [mingw] | |
| exclude: | |
| - python-install: conda | |
| with-coverage: false | |
| - python-install: pip | |
| with-coverage: true | |
| - os: windows-latest | |
| install-zmq: false | |
| - os: windows-latest | |
| with-asan: true | |
| - python-install: conda | |
| install-zmq: false | |
| - python-install: conda | |
| install-mpi: false | |
| - python-install: conda | |
| with-asan: true | |
| include: | |
| - os: ubuntu-latest | |
| python-install: pip | |
| install-zmq: true | |
| install-mpi: true | |
| install-rmq: true | |
| with-coverage: true | |
| with-asan: false | |
| with-elf: true | |
| with-valgrind: false | |
| windows-compiler: mingw | |
| - os: ubuntu-latest | |
| python-install: pip | |
| install-zmq: true | |
| install-mpi: false | |
| install-rmq: true | |
| with-coverage: true | |
| with-asan: false | |
| with-elf: true | |
| with-valgrind: false | |
| windows-compiler: mingw | |
| - os: macos-latest | |
| python-install: pip | |
| install-zmq: true | |
| install-mpi: false | |
| install-rmq: true | |
| with-coverage: false | |
| with-asan: true | |
| with-elf: true | |
| with-valgrind: false | |
| windows-compiler: mingw | |
| - os: ubuntu-latest | |
| python-install: pip | |
| install-zmq: true | |
| install-mpi: false | |
| install-rmq: true | |
| with-coverage: false | |
| with-asan: false | |
| with-elf: false | |
| with-valgrind: true | |
| windows-compiler: mingw | |
| - os: macos-latest | |
| python-install: pip | |
| install-zmq: true | |
| install-mpi: false | |
| install-rmq: true | |
| with-coverage: false | |
| with-asan: false | |
| with-elf: false | |
| with-valgrind: true | |
| windows-compiler: mingw | |
| - os: windows-latest | |
| python-install: pip | |
| install-zmq: true | |
| install-mpi: true | |
| install-rmq: true | |
| with-coverage: false | |
| with-asan: false | |
| with-elf: false | |
| with-valgrind: false | |
| windows-compiler: msvc | |
| - os: windows-latest | |
| python-install: conda | |
| install-zmq: true | |
| install-mpi: true | |
| install-rmq: true | |
| with-coverage: false | |
| with-asan: false | |
| with-elf: false | |
| with-valgrind: false | |
| windows-compiler: msvc | |
| fail-fast: false | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| ################################### | |
| # PIP SETUP | |
| ################################### | |
| - name: Install dependencies on Ubuntu | |
| if: matrix.os == 'ubuntu-latest' && matrix.python-install == 'pip' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libc6-dbg gdb valgrind lcov libcmocka-dev gfortran graphviz doxygen>=1.9.2 | |
| sudo apt upgrade --fix-missing | |
| valgrind --version | |
| - name: Install dependencies on Mac | |
| if: matrix.os == 'macos-latest' && matrix.python-install == 'pip' | |
| run: | | |
| brew link --overwrite [email protected] | |
| brew install cmocka lcov gnutls graphviz doxygen>=1.9.2 # llvm | |
| # Required for compiling with clang & gfortran | |
| echo "FC=$(which gfortran-12)" >> "$GITHUB_ENV" | |
| # - name: Set vcpkg triplet on Windows (mingw) | |
| # if: matrix.os == 'windows-latest' && matrix.windows-compiler == 'mingw' | |
| # shell: bash -l {0} | |
| # run: | | |
| # # echo "VCPKG_TRIPLET=x64-mingw" >> "$GITHUB_ENV" | |
| # echo "VCPKG_TRIPLET=x64-mingw-static" >> "$GITHUB_ENV" | |
| - name: Set vcpkg triplet on Windows (msvc) | |
| if: matrix.os == 'windows-latest' # && matrix.windows-compiler == 'msvc' | |
| shell: bash -l {0} | |
| run: | | |
| echo "VCPKG_TRIPLET=x64-windows" >> "$GITHUB_ENV" | |
| # echo "VCPKG_TRIPLET=x64-windows-static" >> "$GITHUB_ENV" | |
| - name: Install dependencies on Windows | |
| if: matrix.os == 'windows-latest' && matrix.python-install == 'pip' | |
| run: | | |
| vcpkg.exe install cmocka --triplet $env:VCPKG_TRIPLET | |
| # - name: Set flags for dependencies on Windows | |
| # if: matrix.os == 'windows-latest' && matrix.python-install == 'pip' && matrix.windows-compiler == 'mingw' | |
| # shell: bash -l {0} | |
| # run: | | |
| # echo "CC=gcc.exe" >> "$GITHUB_ENV" | |
| # echo "CXX=c++.exe" >> "$GITHUB_ENV" | |
| # - name: Set flags for dependencies on Windows | |
| # if: matrix.os == 'windows-latest' # && matrix.python-install == 'pip' | |
| # shell: bash -l {0} | |
| # run: | | |
| # echo "FC=gfortran.exe" >> "$GITHUB_ENV" | |
| # ZeroMQ dependencies | |
| - name: Install ZeroMQ (Ubuntu) | |
| if: matrix.os == 'ubuntu-latest' && matrix.install-zmq && matrix.python-install == 'pip' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libzmq3-dev libgomp1 | |
| sudo apt upgrade --fix-missing | |
| - name: Install ZeroMQ (Mac) | |
| if: matrix.os == 'macos-latest' && matrix.install-zmq && matrix.python-install == 'pip' | |
| run: | | |
| brew install zeromq libomp | |
| - name: Install ZeroMQ (Windows) | |
| if: matrix.os == 'windows-latest' && matrix.install-zmq && matrix.python-install == 'pip' | |
| run: | | |
| vcpkg.exe install zeromq --triplet $env:VCPKG_TRIPLET | |
| # MPI dependencies | |
| - name: Install MPI (Ubuntu) | |
| if: matrix.os == 'ubuntu-latest' && matrix.install-mpi && matrix.python-install == 'pip' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y mpich | |
| sudo apt upgrade --fix-missing | |
| - name: Install MPI (Mac) | |
| if: matrix.os == 'macos-latest' && matrix.install-mpi && matrix.python-install == 'pip' | |
| run: | | |
| brew install open-mpi | |
| # - name: Install MPI (Windows) | |
| # if: matrix.os == 'windows-latest' && matrix.install-mpi && matrix.python-install == 'pip' | |
| # run: | | |
| # vcpkg.exe install msmpi --triplet $env:VCPKG_TRIPLET | |
| # RabbitMQ dependencies | |
| - name: Install RabbitMQ (Ubuntu) | |
| if: matrix.os == 'ubuntu-latest' && matrix.install-rmq # && matrix.python-install == 'pip' | |
| run: | | |
| sudo apt-get install -y rabbitmq-server librabbitmq-dev | |
| sudo systemctl start rabbitmq-server | |
| - name: Install RabbitMQ (Mac) | |
| if: matrix.os == 'macos-latest' && matrix.install-rmq # && matrix.python-install == 'pip' | |
| run: | | |
| brew install rabbitmq rabbitmq-c | |
| brew services start rabbitmq | |
| - name: Install RabbitMQ (Windows) | |
| if: matrix.os == 'windows-latest' && matrix.install-rmq # && matrix.python-install == 'pip' | |
| run: | | |
| choco install rabbitmq | |
| vcpkg.exe install librabbitmq --triplet $env:VCPKG_TRIPLET | |
| - name: Setup Python | |
| if: matrix.python-install == 'pip' | |
| id: pysetup | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.11' | |
| - name: Fix Python path on mac | |
| if: matrix.os == 'macos-latest' && matrix.python-install == 'pip' | |
| run: | | |
| tee -a ~/.profile <<<'export PATH="${pythonLocation}/bin:${PATH}"' | |
| - name: Install Python dependencies | |
| if: matrix.python-install == 'pip' | |
| run: | | |
| python -m pip install -r requirements.txt | |
| python -m pip install -r requirements-test.txt | |
| ################################### | |
| # CONDA SETUP | |
| ################################### | |
| - name: Set up MSVC Compiler on windows | |
| uses: ilammy/msvc-dev-cmd@v1 | |
| if: matrix.os == 'windows-latest' # && matrix.python-install == 'conda' | |
| with: | |
| toolset: 14.0 | |
| - name: Set up miniconda test environment | |
| if: matrix.python-install == 'conda' | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: yggdrasil | |
| environment-file: environment.yml | |
| auto-update-conda: true | |
| channels: conda-forge | |
| channel-priority: strict | |
| miniforge-variant: Mambaforge | |
| use-mamba: true | |
| - name: Install doxgen on unix systems | |
| if: matrix.os != 'windows-latest' && matrix.python-install == 'conda' | |
| shell: bash -l {0} | |
| run: | | |
| mamba install doxygen>=1.9.2 graphviz -y | |
| - name: Install LLVM on mac for OpenMP | |
| if: matrix.os == 'macos-latest' && matrix.python-install == 'conda' | |
| # shell: bash -l {0} | |
| run: | | |
| mamba install llvm -y | |
| - name: Install compilers using conda on Linux/Mac | |
| if: matrix.os != 'windows-latest' && matrix.python-install == 'conda' | |
| shell: bash -l {0} | |
| run: | | |
| mamba install c-compiler cxx-compiler fortran-compiler | |
| - name: Install MinGW on windows for Fortran (mingw) | |
| if: matrix.os == 'windows-latest' && matrix.python-install == 'conda' && matrix.windows-compiler == 'mingw' | |
| shell: bash -l {0} | |
| run: | | |
| mamba install m2w64-gcc m2w64-gcc-fortran m2w64-toolchain_win-64 libpython -c msys2 -y # winpthreads | |
| mamba install m2w64-gcc-libs m2w64-gcc-libs-core m2w64-gcc-libgfortran m2w64-libwinpthread-git msys2-conda-epoch -c msys2 -y | |
| - name: Install MinGW on windows for Fortran (msvc) | |
| if: matrix.os == 'windows-latest' && matrix.python-install == 'conda' && matrix.windows-compiler == 'msvc' | |
| shell: bash -l {0} | |
| run: | | |
| mamba install m2w64-gcc-fortran libpython -y | |
| - name: Install ZeroMQ (mamba) | |
| if: matrix.python-install == 'conda' && matrix.install-zmq | |
| shell: bash -l {0} | |
| run: | | |
| mamba install zeromq -y | |
| # - name: Install RabbitMQ (mamba) | |
| # if: matrix.python-install == 'conda' && matrix.install-rmq | |
| # shell: bash -l {0} | |
| # run: | | |
| # mamba install librabbitmq -y | |
| ################################### | |
| # SET CONFIG FLAGS | |
| ################################### | |
| - name: Global config flags | |
| shell: bash -l {0} | |
| run: | | |
| CMAKE_BUILD_TYPE_TEST="Debug" | |
| echo "CMAKE_BUILD_TYPE_TEST=Debug" >> "$GITHUB_ENV" | |
| echo "CMAKE_ARGS_BASE=-DCMAKE_VERBOSE_MAKEFILE:BOOL=ON" >> "$GITHUB_ENV" | |
| echo "CMAKE_ARGS_NO_PYTHON=-DYGG_Fortran_REQUIRED=ON" >> "$GITHUB_ENV" | |
| echo "CMAKE_ARGS_TEST=-DYGG_BUILD_TESTS=ON -DCMAKE_BUILD_TYPE=${CMAKE_BUILD_TYPE_TEST} -DYGG_DEBUG_LEVEL=5" >> "$GITHUB_ENV" | |
| echo "CMAKE_ARGS_PYTHON=-DYGG_DEBUG_LEVEL=5" >> "$GITHUB_ENV" | |
| echo "TEST_FLAGS=-C ${CMAKE_BUILD_TYPE_TEST} --output-on-failure -VV" >> "$GITHUB_ENV" | |
| - name: Coverage config flags | |
| if: matrix.with-coverage == true && matrix.os != 'windows-latest' | |
| shell: bash -l {0} | |
| run: | | |
| echo "CMAKE_ARGS_TEST=${{ env.CMAKE_ARGS_TEST }} -DYGG_ENABLE_COVERAGE=ON" >> "$GITHUB_ENV" | |
| - name: ASAN config flags | |
| if: matrix.with-asan == true | |
| shell: bash -l {0} | |
| run: | | |
| echo "CMAKE_ARGS_BASE=${{ env.CMAKE_ARGS_BASE }} -DYGG_BUILD_ASAN=ON -DYGG_BUILD_UBSAN=ON" >> "$GITHUB_ENV" | |
| # echo "CMAKE_ARGS_TEST=-DYGGDRASIL_DISABLE_PYTHON_C_API=ON" >> "$GITHUB_ENV" | |
| echo "ASAN_OPTIONS=detect_odr_violation=0:detect_container_overflow=0" >> $GITHUB_ENV | |
| echo "TEST_FLAGS=${{ env.TEST_FLAGS }} -E valgrind*" >> "$GITHUB_ENV" | |
| # - name: Fortran config flags | |
| # if: matrix.with-asan == false | |
| # shell: bash -l {0} | |
| # run: | | |
| # echo "CMAKE_ARGS_BASE=${{ env.CMAKE_ARGS_BASE }} -DBUILD_FORTRAN_LIBRARY=ON" >> "$GITHUB_ENV" | |
| - name: ASAN dynamic library | |
| if: matrix.with-asan == true && matrix.os == 'macos-latest' | |
| shell: bash -l {0} | |
| run: | | |
| echo "DYLD_INSERT_LIBRARIES=$(clang -print-file-name=libclang_rt.asan_osx_dynamic.dylib)" >> "$GITHUB_ENV" | |
| - name: ELF config flags | |
| if: matrix.with-elf == false | |
| shell: bash -l {0} | |
| run: | | |
| echo "CMAKE_ARGS_TEST=${{ env.CMAKE_ARGS_TEST }} -DYGG_ENABLE_ELF=OFF" >> "$GITHUB_ENV" | |
| - name: Valgrind on config flags | |
| if: matrix.with-valgrind == true | |
| shell: bash -l {0} | |
| run: | | |
| echo "CMAKE_ARGS_TEST=${{ env.CMAKE_ARGS_TEST }} -DYGG_ENABLE_INSTRUMENTATION_OPT=OFF -DYGGDRASIL_DISABLE_PYTHON_C_API=ON" >> "$GITHUB_ENV" | |
| - name: Valgrind off config flags | |
| if: matrix.with-valgrind == false | |
| shell: bash -l {0} | |
| run: | | |
| echo "CMAKE_ARGS_TEST=${{ env.CMAKE_ARGS_TEST }} -DYGG_SKIP_VALGRIND_TESTS=ON" >> "$GITHUB_ENV" | |
| ############################################ | |
| # SET CONFIG FLAGS THAT CONTAIN QUOTES LAST | |
| ############################################ | |
| - name: Pip config flags | |
| if: matrix.python-install == 'pip' | |
| shell: bash -l {0} | |
| run: | | |
| echo "CMAKE_ARGS_BASE=${{ env.CMAKE_ARGS_BASE }} \"-DPython3_ROOT_DIR=${{ env.pythonLocation }}\"" >> "$GITHUB_ENV" | |
| echo "CMAKE_ARGS_PYTHON=${{ env.CMAKE_ARGS_PYTHON }} \"-DPython_ROOT_DIR=${{ env.pythonLocation }}\"" >> "$GITHUB_ENV" # required? | |
| # echo "CMAKE_ARGS_NO_PYTHON=${{ env.CMAKE_ARGS_NO_PYTHON }} \"-DCMAKE_INSTALL_PREFIX=${{ github.workspace }}/_install\"" >> "$GITHUB_ENV" | |
| - name: Pip config flags on Windows | |
| if: matrix.python-install == 'pip' && matrix.os == 'windows-latest' | |
| shell: bash -l {0} | |
| run: | | |
| echo "CMAKE_ARGS_NO_PYTHON=${{ env.CMAKE_ARGS_NO_PYTHON }} \"-DCMAKE_INSTALL_PREFIX=${{ github.workspace }}\\_install\" \"-DCMAKE_PREFIX_PATH=${VCPKG_INSTALLATION_ROOT}\installed\\${VCPKG_TRIPLET}\"" >> "$GITHUB_ENV" | |
| echo "PYTHON_CONFIG_FLAGS=${{ env.PYTHON_CONFIG_FLAGS }} --config-settings=cmake.define.CMAKE_PREFIX_PATH=\"${VCPKG_INSTALLATION_ROOT}\installed\\${VCPKG_TRIPLET}\" --config-settings=cmake.define.Python3_ROOT_DIR=${{ env.pythonLocation }} --config-settings=cmake.define.Python_ROOT_DIR=${{ env.pythonLocation }}" >> "$GITHUB_ENV" | |
| ################################### | |
| # Add paths for Windows dlls | |
| ################################### | |
| - name: Mingw library paths on Windows (Powershell) | |
| if: matrix.os == 'windows-latest' && matrix.python-install == 'pip' # && matrix.windows-compiler == 'mingw' | |
| run: | | |
| # This isn't necessary, but it speeds up the build | |
| echo "C:\mingw64\bin" | Out-File -FilePath $env:GITHUB_PATH -Encoding utf8 -Append | |
| - name: Mingw library paths on Windows (Bash) | |
| if: matrix.os == 'windows-latest' && matrix.python-install == 'pip' # && matrix.windows-compiler == 'mingw' | |
| shell: bash -l {0} | |
| run: | | |
| # This isn't necessary, but it speeds up the build | |
| DLL_DIRECTORY="C:\mingw64\bin" | |
| ls ${DLL_DIRECTORY} | |
| echo "${DLL_DIRECTORY}" >> $GITHUB_PATH | |
| - name: Vcpkg library paths on Windows (Powershell) | |
| if: matrix.python-install == 'pip' && matrix.os == 'windows-latest' | |
| run: | | |
| echo "$env:VCPKG_INSTALLATION_ROOT\installed\$env:VCPKG_TRIPLET\debug\bin" | Out-File -FilePath $env:GITHUB_PATH -Encoding utf8 -Append | |
| echo "$env:VCPKG_INSTALLATION_ROOT\installed\$env:VCPKG_TRIPLET\debug\lib" | Out-File -FilePath $env:GITHUB_PATH -Encoding utf8 -Append | |
| - name: Vcpkg library paths on Windows (Bash) | |
| if: matrix.python-install == 'pip' && matrix.os == 'windows-latest' | |
| shell: bash -l {0} | |
| run: | | |
| DLL_DIRECTORY="${VCPKG_INSTALLATION_ROOT}\installed\\${VCPKG_TRIPLET}\debug\bin" | |
| ls ${DLL_DIRECTORY} | |
| echo "${DLL_DIRECTORY}" >> $GITHUB_PATH | |
| LIB_DIRECTORY="${VCPKG_INSTALLATION_ROOT}\installed\\${VCPKG_TRIPLET}\debug\lib" | |
| ls ${LIB_DIRECTORY} | |
| echo "${LIB_DIRECTORY}" >> $GITHUB_PATH | |
| - name: Conda library paths on Windows | |
| if: matrix.python-install == 'conda' && matrix.os == 'windows-latest' | |
| shell: bash -l {0} | |
| run: | | |
| # This isn't necessary, but it speeds up the build | |
| LIB_DIRECTORY="${CONDA_PREFIX}/Library/lib" | |
| ls ${LIB_DIRECTORY} | |
| echo "${LIB_DIRECTORY}" >> $GITHUB_PATH | |
| DLL_DIRECTORY="${CONDA_PREFIX}/Library/bin" | |
| ls ${DLL_DIRECTORY} | |
| echo "${DLL_DIRECTORY}" >> $GITHUB_PATH | |
| - name: Conda library paths on Windows (mingw) | |
| if: matrix.python-install == 'conda' && matrix.os == 'windows-latest' && matrix.windows-compiler == 'mingw' | |
| shell: bash -l {0} | |
| run: | | |
| MIN_DIRECTORY="${CONDA_PREFIX}/Library/mingw-w64/x86_64-w64-mingw32" | |
| echo "ls MIN_DIRECTORY=${MIN_DIRECTORY}" | |
| ls ${MIN_DIRECTORY} | |
| MININC_DIRECTORY="${CONDA_PREFIX}/Library/mingw-w64/x86_64-w64-mingw32/include" | |
| echo "ls MININC_DIRECTORY=${MININC_DIRECTORY}" | |
| ls ${MININC_DIRECTORY} | |
| MINLIB_DIRECTORY="${CONDA_PREFIX}/Library/mingw-w64/x86_64-w64-mingw32/lib" | |
| echo "ls MINLIB_DIRECTORY=${MINLIB_DIRECTORY}" | |
| ls ${MINLIB_DIRECTORY} | |
| MINBIN_DIRECTORY="${CONDA_PREFIX}/Library/mingw-w64/x86_64-w64-mingw32/bin" | |
| echo "ls MINBIN_DIRECTORY=${MINBIN_DIRECTORY}" | |
| ls ${MINBIN_DIRECTORY} | |
| echo "MINGW_PTHREAD_ROOT=${MIN_DIRECTORY}" >> "$GITHUB_ENV" | |
| - name: Conda library paths on Windows (msvc) | |
| if: matrix.python-install == 'conda' && matrix.os == 'windows-latest' && matrix.windows-compiler == 'msvc' | |
| shell: bash -l {0} | |
| run: | | |
| MIN_DIRECTORY="${CONDA_PREFIX}/Library/mingw-w64" | |
| echo "ls MIN_DIRECTORY=${MIN_DIRECTORY}" | |
| ls ${MIN_DIRECTORY} | |
| MININC_DIRECTORY="${CONDA_PREFIX}/Library/mingw-w64" | |
| echo "ls MININC_DIRECTORY=${MININC_DIRECTORY}" | |
| ls ${MININC_DIRECTORY} | |
| MINLIB_DIRECTORY="${CONDA_PREFIX}/Library/mingw-w64/lib" | |
| echo "ls MINLIB_DIRECTORY=${MINLIB_DIRECTORY}" | |
| ls ${MINLIB_DIRECTORY} | |
| MINBIN_DIRECTORY="${CONDA_PREFIX}/Library/mingw-w64/bin" | |
| echo "ls MINBIN_DIRECTORY=${MINBIN_DIRECTORY}" | |
| ls ${MINBIN_DIRECTORY} | |
| - name: Set CMAKE_GENERATOR for MinGW | |
| if: matrix.with-asan == false && matrix.os == 'windows-latest' && matrix.windows-compiler == 'mingw' | |
| shell: bash -l {0} | |
| run: | | |
| echo "CMAKE_GENERATOR=MinGW Makefiles" >> $GITHUB_ENV | |
| ################################### | |
| # Check | |
| ################################### | |
| - name: Check for numpy (CONDA) | |
| if: matrix.python-install == 'conda' | |
| shell: bash -l {0} | |
| run: | | |
| python -c "import sys; print(sys.executable)" | |
| python -c "import numpy; print(numpy.get_include())" | |
| - name: Check for numpy (PIP) | |
| if: matrix.python-install == 'pip' | |
| run: | | |
| python -c "import sys; print(sys.executable)" | |
| python -c "import numpy; print(numpy.get_include())" | |
| ################################### | |
| # Configure | |
| ################################### | |
| - name: Remove Strawberry Perl from PATH | |
| if: matrix.python-install == 'pip' && matrix.os == 'windows-latest' | |
| run: | | |
| $env:PATH = $env:PATH -replace "C:\\Strawberry\\c\\bin;", "" | |
| "PATH=$env:PATH" | Out-File -FilePath $env:GITHUB_ENV -Append | |
| Get-ChildItem -Path C:\Strawberry -Recurse | Remove-Item -force -recurse | |
| Remove-Item C:\Strawberry -Force | |
| - name: Check cmake (PIP) | |
| if: matrix.python-install == 'pip' && matrix.os == 'windows-latest' | |
| run: | | |
| where.exe cmake | Write-Output | |
| where.exe ctest | Write-Output | |
| - name: Configure (CONDA) | |
| if: matrix.python-install == 'conda' | |
| shell: bash -l {0} | |
| run: | | |
| mkdir build | |
| cd build | |
| which cmake | |
| cmake .. ${{ env.CMAKE_ARGS_BASE }} ${{ env.CMAKE_ARGS_NO_PYTHON }} ${{ env.CMAKE_ARGS_TEST }} | |
| - name: Configure (PIP) | |
| if: matrix.python-install == 'pip' | |
| run: | | |
| mkdir build | |
| cd build | |
| cmake .. ${{ env.CMAKE_ARGS_BASE }} ${{ env.CMAKE_ARGS_NO_PYTHON }} ${{ env.CMAKE_ARGS_TEST }} | |
| ################################### | |
| # Build CPP & C | |
| ################################### | |
| - name: Build C++ & C (CONDA) | |
| if: matrix.python-install == 'conda' | |
| shell: bash -l {0} | |
| run: | | |
| cd build | |
| cmake --build . --config ${{ env.CMAKE_BUILD_TYPE_TEST }} | |
| - name: Build C++ & C (PIP) | |
| if: matrix.python-install == 'pip' | |
| run: | | |
| cd build | |
| cmake --build . --config ${{ env.CMAKE_BUILD_TYPE_TEST }} | |
| ################################### | |
| # Test CPP, C, & Fortran | |
| ################################### | |
| - name: Test C++, C, & Fortran Interfaces (CONDA) | |
| if: matrix.python-install == 'conda' | |
| shell: bash -l {0} | |
| run: | | |
| mamba list | |
| echo "PATH=$PATH" | |
| cd build | |
| which ctest | |
| ctest ${{ env.TEST_FLAGS }} | |
| - name: Show path (PIP & WINDOWS) | |
| if: matrix.python-install == 'pip' && matrix.os == 'windows-latest' | |
| run: | | |
| echo $env:path | |
| - name: Test C++, C, & Fortran Interfaces (PIP) | |
| if: matrix.python-install == 'pip' | |
| run: | | |
| echo "PATH=$env:PATH" | |
| cd build | |
| ctest ${{ env.TEST_FLAGS }} | |
| ################################### | |
| # Build Python | |
| ################################### | |
| - name: Set CMAKE_ARGS for Python build | |
| shell: bash -l {0} | |
| run: | | |
| echo "OLD_CMAKE_ARGS=${{ env.CMAKE_ARGS }}" >> "$GITHUB_ENV" | |
| echo "CMAKE_ARGS=${{ env.CMAKE_ARGS_BASE }} ${{ env.CMAKE_ARGS_PYTHON }}" >> "$GITHUB_ENV" | |
| - name: Build Python (CONDA) | |
| if: matrix.python-install == 'conda' | |
| shell: bash -l {0} | |
| run: | | |
| python -m pip install . -v ${{ env.PYTHON_CONFIG_FLAGS }} | |
| - name: Build Python (PIP) | |
| if: matrix.python-install == 'pip' | |
| run: | | |
| python -m pip install . -v ${{ env.PYTHON_CONFIG_FLAGS }} | |
| - name: Unset CMAKE_ARGS for Python build | |
| shell: bash -l {0} | |
| run: | | |
| echo "CMAKE_ARGS=${{ env.OLD_CMAKE_ARGS }}" >> "$GITHUB_ENV" | |
| ################################### | |
| # Test Python | |
| ################################### | |
| - name: Test Python Interfaces (CONDA) | |
| if: matrix.python-install == 'conda' && matrix.with-elf == false && matrix.with-valgrind == false | |
| shell: bash -l {0} | |
| run: | | |
| pytest -sv python/test | |
| # - name: Check for Python Interfaces (PIP) | |
| # if: matrix.python-install == 'pip' && matrix.with-elf == false && matrix.with-valgrind == false | |
| # shell: bash -l {0} | |
| # run: | | |
| # PYTHON_EXEC=${{ steps.pysetup.outputs.python-path }} | |
| # ${PYTHON_EXEC} -m site | |
| # ${PYTHON_EXEC} -c 'import site; print(site.getsitepackages())' | |
| # ls $(${PYTHON_EXEC} -c 'import site; print(site.getsitepackages()[0])') | |
| # ls $(${PYTHON_EXEC} -c 'import os; import site; print(os.path.join(site.getsitepackages()[0], "pyYggdrasil"))') | |
| # - name: Test Python Interfaces w/ LLDB (PIP) | |
| # if: matrix.python-install == 'pip' && matrix.with-elf == false && matrix.with-valgrind == false && matrix.os == 'macos-latest' | |
| # run: | | |
| # lldb -o 'run' -o 'quit' -- $(which python) -m pytest -svx python/test | |
| # - name: Test Python Interfaces w/ GDB (PIP) | |
| # if: matrix.python-install == 'pip' && matrix.with-elf == false && matrix.with-valgrind == false && matrix.os == 'ubuntu-latest' | |
| # run: | | |
| # gdb --batch -x gdb_commands.txt --args $(which python) -m pytest -svx python/test | |
| - name: Test Python Interfaces (PIP) | |
| if: matrix.python-install == 'pip' && matrix.with-elf == false && matrix.with-valgrind == false | |
| run: | | |
| pytest -sv python/test | |
| ################################### | |
| # Speed tests | |
| ################################### | |
| # - name: Set the install directory and add it to the path | |
| # shell: bash -l {0} | |
| # if: matrix.python-install == 'pip' && matrix.os == 'windows-latest' | |
| # run: | | |
| # INSTALL_DIR=$GITHUB_WORKSPACE\\_install | |
| # echo "INSTALL_DIR=$INSTALL_DIR" >> "$GITHUB_ENV" | |
| # echo "${INSTALL_DIR}" >> $GITHUB_PATH | |
| - name: Run speed tests | |
| shell: bash -l {0} | |
| run: | | |
| echo "PATH=$PATH" | |
| ./run_tests.sh --rebuild --speed --config Release ${{ env.CMAKE_ARGS_BASE }} ${{ env.CMAKE_ARGS_NO_PYTHON }} --verbose | |
| ################################### | |
| # Docs tests | |
| ################################### | |
| - name: Build docs | |
| if: matrix.os != 'windows-latest' && (matrix.os == 'macos-latest' || matrix.python-install == 'conda') | |
| shell: bash -l {0} | |
| run: | | |
| ./run_tests.sh --docs | |
| ################################### | |
| # Coverage | |
| ################################### | |
| - name: Upload coverage report | |
| if: matrix.with-coverage == true && matrix.os != 'windows-latest' | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| name: ${{ matrix.os }}-${{ matrix.python-install }}-${{ matrix.install-zmq }}-${{ matrix.install-mpi }}-${{ matrix.with-coverage }}-${{ matrix.with-asan }}-${{ matrix.with-elf }}-${{ matrix.with-valgrind }} | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: build/coverage/coverage.info | |
| # directory: build/Testing/CoverageInfo | |
| functionalities: gcov |