Remove extra address init #86
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| name: Test of package installation & execution | |
| 'on': | |
| push: | |
| branches-ignore: | |
| - gh-pages | |
| tags: | |
| - '*' | |
| schedule: | |
| - cron: 0 10 * * 1 | |
| jobs: | |
| build_cpp: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-install: [pip, conda] | |
| install-zmq: [true, false] | |
| install-mpi: [true] | |
| with-coverage: [false, true] | |
| with-asan: [false] | |
| with-elf: [false] | |
| with-valgrind: [false] | |
| exclude: | |
| - python-install: conda | |
| with-coverage: false | |
| - python-install: pip | |
| with-coverage: true | |
| - os: windows-latest | |
| install-zmq: false | |
| - os: windows-latest | |
| with-asan: true | |
| - python-install: conda | |
| install-zmq: false | |
| - python-install: conda | |
| install-mpi: false | |
| - python-install: conda | |
| with-asan: true | |
| include: | |
| - os: ubuntu-latest | |
| python-install: pip | |
| install-zmq: true | |
| install-mpi: true | |
| with-coverage: true | |
| with-asan: false | |
| with-elf: true | |
| with-valgrind: false | |
| - os: ubuntu-latest | |
| python-install: pip | |
| install-zmq: true | |
| install-mpi: false | |
| with-coverage: true | |
| with-asan: false | |
| with-elf: true | |
| with-valgrind: false | |
| - os: macos-latest | |
| python-install: pip | |
| install-zmq: true | |
| install-mpi: false | |
| with-coverage: false | |
| with-asan: true | |
| with-elf: true | |
| with-valgrind: false | |
| - os: ubuntu-latest | |
| python-install: pip | |
| install-zmq: true | |
| install-mpi: false | |
| with-coverage: false | |
| with-asan: false | |
| with-elf: false | |
| with-valgrind: true | |
| - os: macos-latest | |
| python-install: pip | |
| install-zmq: true | |
| install-mpi: false | |
| with-coverage: false | |
| with-asan: false | |
| with-elf: false | |
| with-valgrind: true | |
| fail-fast: false | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| ################################### | |
| # PIP SETUP | |
| ################################### | |
| - name: Install dependencies on Ubuntu | |
| if: matrix.os == 'ubuntu-latest' && matrix.python-install == 'pip' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libc6-dbg gdb valgrind lcov libcmocka-dev | |
| sudo apt upgrade --fix-missing | |
| valgrind --version | |
| - name: Install dependencies on Mac | |
| if: matrix.os == 'macos-latest' && matrix.python-install == 'pip' | |
| run: | | |
| brew install llvm cmocka lcov gnutls | |
| - name: Install dependencies on Windows | |
| if: matrix.os == 'windows-latest' && matrix.python-install == 'pip' | |
| run: | | |
| vcpkg.exe install cmocka --triplet x64-windows | |
| # ZeroMQ dependencies | |
| - name: Install ZeroMQ | |
| if: matrix.os == 'ubuntu-latest' && matrix.install-zmq && matrix.python-install == 'pip' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libzmq3-dev libgomp1 | |
| sudo apt upgrade --fix-missing | |
| - name: Install ZeroMQ | |
| if: matrix.os == 'macos-latest' && matrix.install-zmq && matrix.python-install == 'pip' | |
| run: | | |
| brew install zeromq libomp | |
| - name: Install ZeroMQ | |
| if: matrix.os == 'windows-latest' && matrix.install-zmq && matrix.python-install == 'pip' | |
| run: | | |
| vcpkg.exe install zeromq --triplet x64-windows | |
| # MPI dependencies | |
| - name: Install MPI dependencies on Ubuntu | |
| if: matrix.os == 'ubuntu-latest' && matrix.install-mpi && matrix.python-install == 'pip' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y mpich | |
| sudo apt upgrade --fix-missing | |
| - name: Install MPI dependencies on Mac | |
| if: matrix.os == 'macos-latest' && matrix.install-mpi && matrix.python-install == 'pip' | |
| run: | | |
| brew install open-mpi | |
| # - name: MPI dependencies on Windows | |
| # if: matrix.os == 'windows-latest' && matrix.install-mpi && matrix.python-install == 'pip' | |
| # run: | | |
| # vcpkg.exe install msmpi --triplet x64-windows | |
| - name: Setup Python | |
| if: matrix.python-install == 'pip' | |
| id: pysetup | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.11' | |
| - name: Fix Python path on mac | |
| if: matrix.os == 'macos-latest' && matrix.python-install == 'pip' | |
| run: | | |
| tee -a ~/.profile <<<'export PATH="${pythonLocation}/bin:${PATH}"' | |
| - name: Install Python dependencies | |
| if: matrix.python-install == 'pip' | |
| run: | | |
| python -m pip install -r requirements.txt | |
| python -m pip install -r requirements-test.txt | |
| ################################### | |
| # CONDA SETUP | |
| ################################### | |
| - name: Set up MSVC Compiler on windows | |
| uses: ilammy/msvc-dev-cmd@v1 | |
| if: matrix.os == 'windows-latest' && matrix.python-install == 'conda' | |
| with: | |
| toolset: 14.0 | |
| - name: Set up miniconda test environment | |
| if: matrix.python-install == 'conda' | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: yggdrasil | |
| environment-file: environment.yml | |
| auto-update-conda: true | |
| channels: conda-forge | |
| channel-priority: strict | |
| - name: Install LLVM on mac for OpenMP | |
| if: matrix.os == 'macos-latest' && matrix.python-install == 'conda' | |
| run: | | |
| conda install llvm -y | |
| ################################### | |
| # SET CONFIG FLAGS | |
| ################################### | |
| - name: Global config flags | |
| shell: bash -l {0} | |
| run: | | |
| echo "CONFIG_FLAGS=-DYGG_BUILD_TESTS=ON -DCMAKE_BUILD_TYPE=Debug -DBUILD_PYTHON_LIBRARY=OFF -DCMAKE_INSTALL_PREFIX=${{ github.workspace }}/_install -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON" >> "$GITHUB_ENV" | |
| echo "TEST_FLAGS=-C Debug --output-on-failure -VV" >> "$GITHUB_ENV" | |
| echo "PYTHON_CMAKE_ARGS=" >> "$GITHUB_ENV" | |
| - name: Coverage config flags | |
| if: matrix.with-coverage == true | |
| shell: bash -l {0} | |
| run: | | |
| echo "CONFIG_FLAGS=${{ env.CONFIG_FLAGS }} -DYGG_ENABLE_COVERAGE=ON" >> "$GITHUB_ENV" | |
| - name: ASAN config flags | |
| if: matrix.with-asan == true | |
| shell: bash -l {0} | |
| run: | | |
| echo "CONFIG_FLAGS=${{ env.CONFIG_FLAGS }} -DYGG_BUILD_ASAN=ON -DYGG_BUILD_UBSAN=ON -DYGGDRASIL_DISABLE_PYTHON_C_API=ON" >> "$GITHUB_ENV" | |
| echo "PYTHON_CMAKE_ARGS=${{ env.PYTHON_CMAKE_ARGS }} -DYGG_BUILD_ASAN=ON -DYGG_BUILD_UBSAN=ON" >> "$GITHUB_ENV" | |
| echo "ASAN_OPTIONS=detect_odr_violation=0:detect_container_overflow=0" >> $GITHUB_ENV | |
| echo "TEST_FLAGS=${{ env.TEST_FLAGS }} -E valgrind*" >> "$GITHUB_ENV" | |
| - name: ASAN dynamic library | |
| if: matrix.with-asan == true && matrix.os == 'macos-latest' | |
| shell: bash -l {0} | |
| run: | | |
| echo "DYLD_INSERT_LIBRARIES=$(clang -print-file-name=libclang_rt.asan_osx_dynamic.dylib)" >> "$GITHUB_ENV" | |
| - name: ELF config flags | |
| if: matrix.with-elf == false | |
| shell: bash -l {0} | |
| run: | | |
| echo "CONFIG_FLAGS=${{ env.CONFIG_FLAGS }} -DYGG_ENABLE_ELF=OFF" >> "$GITHUB_ENV" | |
| - name: Valgrind on config flags | |
| if: matrix.with-valgrind == true | |
| shell: bash -l {0} | |
| run: | | |
| echo "CONFIG_FLAGS=${{ env.CONFIG_FLAGS }} -DYGG_ENABLE_INSTRUMENTATION_OPT=OFF -DYGGDRASIL_DISABLE_PYTHON_C_API=ON" >> "$GITHUB_ENV" | |
| - name: Valgrind off config flags | |
| if: matrix.with-valgrind == false | |
| shell: bash -l {0} | |
| run: | | |
| echo "CONFIG_FLAGS=${{ env.CONFIG_FLAGS }} -DYGG_SKIP_VALGRIND_TESTS=ON" >> "$GITHUB_ENV" | |
| - name: Pip config flags | |
| if: matrix.python-install == 'pip' | |
| shell: bash -l {0} | |
| run: | | |
| echo "CONFIG_FLAGS=${{ env.CONFIG_FLAGS }} -DPython3_ROOT_DIR=${{ env.pythonLocation }}" >> "$GITHUB_ENV" | |
| # echo "PYTHON_CMAKE_ARGS=${{ env.PYTHON_CMAKE_ARGS }} -DPython3_ROOT_DIR=${{ env.pythonLocation }}" >> "$GITHUB_ENV" | |
| - name: Conda config flags | |
| if: matrix.python-install == 'conda' | |
| shell: bash -l {0} | |
| run: | | |
| echo "CONFIG_FLAGS=${{ env.CONFIG_FLAGS }} -DCMAKE_PREFIX_PATH=${CONDA_PREFIX}" >> "$GITHUB_ENV" | |
| # echo "PYTHON_CMAKE_ARGS=${{ env.PYTHON_CMAKE_ARGS }} -DCMAKE_PREFIX_PATH=${CONDA_PREFIX}" >> "$GITHUB_ENV" | |
| - name: Pip config flags on Windows | |
| if: matrix.python-install == 'pip' && matrix.os == 'windows-latest' | |
| shell: bash -l {0} | |
| run: | | |
| echo "CONFIG_FLAGS=${{ env.CONFIG_FLAGS }} \"-DCMAKE_PREFIX_PATH=${VCPKG_INSTALLATION_ROOT}\installed\x64-windows\"" >> "$GITHUB_ENV" | |
| # echo "PYTHON_CMAKE_ARGS=${{ env.PYTHON_CMAKE_ARGS }} \"-DCMAKE_PREFIX_PATH=${VCPKG_INSTALLATION_ROOT}\installed\x64-windows\"" >> "$GITHUB_ENV" | |
| echo "PYTHON_CONFIG_FLAGS=${{ env.PYTHON_CONFIG_FLAGS }} --config-settings=cmake.define.CMAKE_PREFIX_PATH=${VCPKG_INSTALLATION_ROOT}\installed\x64-windows --config-settings=cmake.define.Python3_ROOT_DIR=${{ env.pythonLocation }} --config-settings=cmake.define.Python_ROOT_DIR=${{ env.pythonLocation }}" >> "$GITHUB_ENV" | |
| # echo "CONFIG_FLAGS=${{ env.CONFIG_FLAGS }} \"-DPython3_EXECUTABLE=${{ env.pythonLocation }}\python.exe\" \"-DCMAKE_PREFIX_PATH=${VCPKG_INSTALLATION_ROOT}\installed\x64-windows\"" >> "$GITHUB_ENV" | |
| ################################### | |
| # Add paths for Windows dlls | |
| ################################### | |
| - name: Vcpkg library paths on Windows | |
| if: matrix.python-install == 'pip' && matrix.os == 'windows-latest' | |
| shell: bash -l {0} | |
| run: | | |
| # DLL_DIRECTORY="${VCPKG_INSTALLATION_ROOT}\installed\x64-windows\bin" | |
| DLL_DIRECTORY="${VCPKG_INSTALLATION_ROOT}\installed\x64-windows\debug\bin" | |
| ls ${DLL_DIRECTORY} | |
| echo "${DLL_DIRECTORY}" >> $GITHUB_PATH | |
| - name: Conda library paths on Windows | |
| if: matrix.python-install == 'conda' && matrix.os == 'windows-latest' | |
| shell: bash -l {0} | |
| run: | | |
| DLL_DIRECTORY="${CONDA_PREFIX}/Library/lib" | |
| ls ${DLL_DIRECTORY} | |
| echo "${DLL_DIRECTORY}" >> $GITHUB_PATH | |
| ################################### | |
| # Check | |
| ################################### | |
| - name: Check for numpy (CONDA) | |
| if: matrix.python-install == 'conda' | |
| shell: bash -l {0} | |
| run: | | |
| python -c "import sys; print(sys.executable)" | |
| python -c "import numpy; print(numpy.get_include())" | |
| - name: Check for numpy (PIP) | |
| if: matrix.python-install == 'pip' | |
| run: | | |
| python -c "import sys; print(sys.executable)" | |
| python -c "import numpy; print(numpy.get_include())" | |
| ################################### | |
| # Configure | |
| ################################### | |
| - name: Configure (CONDA) | |
| if: matrix.python-install == 'conda' | |
| shell: bash -l {0} | |
| run: | | |
| mkdir build | |
| cd build | |
| cmake .. ${{ env.CONFIG_FLAGS }} | |
| - name: Configure (PIP) | |
| if: matrix.python-install == 'pip' | |
| run: | | |
| mkdir build | |
| cd build | |
| cmake .. ${{ env.CONFIG_FLAGS }} | |
| ################################### | |
| # Build CPP & C | |
| ################################### | |
| - name: Build C++ & C (CONDA) | |
| if: matrix.python-install == 'conda' | |
| shell: bash -l {0} | |
| run: | | |
| cd build | |
| cmake --build . --config Debug | |
| - name: Build C++ & C (PIP) | |
| if: matrix.python-install == 'pip' | |
| run: | | |
| cd build | |
| cmake --build . --config Debug | |
| ################################### | |
| # Build Python | |
| ################################### | |
| - name: Set CMAKE_ARGS for Python build | |
| shell: bash -l {0} | |
| run: | | |
| echo "CMAKE_ARGS=${{ env.PYTHON_CMAKE_ARGS }}" >> "$GITHUB_ENV" | |
| - name: Build Python (CONDA) | |
| if: matrix.python-install == 'conda' | |
| shell: bash -l {0} | |
| run: | | |
| pip install . -v ${{ env.PYTHON_CONFIG_FLAGS }} | |
| - name: Build Python (PIP) | |
| if: matrix.python-install == 'pip' | |
| run: | | |
| pip install . -v ${{ env.PYTHON_CONFIG_FLAGS }} | |
| ################################### | |
| # Test CPP & C | |
| ################################### | |
| - name: Test C++ & C Interfaces (CONDA) | |
| if: matrix.python-install == 'conda' | |
| shell: bash -l {0} | |
| run: | | |
| cd build | |
| ctest ${{ env.TEST_FLAGS }} | |
| - name: Test C++ & C Interfaces (PIP) | |
| if: matrix.python-install == 'pip' | |
| run: | | |
| cd build | |
| # echo "PATH=${PATH}" | |
| ctest ${{ env.TEST_FLAGS }} | |
| ################################### | |
| # Test Python | |
| ################################### | |
| - name: Test Python Interfaces (CONDA) | |
| if: matrix.python-install == 'conda' && matrix.with-elf == false && matrix.with-valgrind == false | |
| shell: bash -l {0} | |
| run: | | |
| pytest -sv python/test | |
| # - name: Check for Python Interfaces (PIP) | |
| # # if: matrix.python-install == 'pip' && matrix.with-asan == false && matrix.with-elf == false && matrix.with-valgrind == false | |
| # if: matrix.python-install == 'pip' && matrix.with-elf == false && matrix.with-valgrind == false | |
| # shell: bash -l {0} | |
| # run: | | |
| # PYTHON_EXEC=${{ steps.pysetup.outputs.python-path }} | |
| # ${PYTHON_EXEC} -m site | |
| # ${PYTHON_EXEC} -c 'import site; print(site.getsitepackages())' | |
| # ls $(${PYTHON_EXEC} -c 'import site; print(site.getsitepackages()[0])') | |
| # ls $(${PYTHON_EXEC} -c 'import os; import site; print(os.path.join(site.getsitepackages()[0], "pyYggdrasil"))') | |
| # - name: Test Python Interfaces w/ LLDB (PIP) | |
| # if: matrix.python-install == 'pip' && matrix.with-elf == false && matrix.with-valgrind == false && matrix.os == 'macos-latest' | |
| # run: | | |
| # lldb -o 'run' -o 'quit' -- $(which python) -m pytest -svx python/test | |
| # - name: Test Python Interfaces w/ GDB (PIP) | |
| # if: matrix.python-install == 'pip' && matrix.with-elf == false && matrix.with-valgrind == false && matrix.os == 'ubuntu-latest' | |
| # run: | | |
| # gdb --batch -x gdb_commands.txt --args $(which python) -m pytest -svx python/test | |
| - name: Test Python Interfaces (PIP) | |
| if: matrix.python-install == 'pip' && matrix.with-elf == false && matrix.with-valgrind == false | |
| run: | | |
| pytest -sv python/test | |
| ################################### | |
| # Coverage | |
| ################################### | |
| - name: Upload coverage report | |
| if: matrix.with-coverage == true | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| name: ${{ matrix.os }}-${{ matrix.python-install }}-${{ matrix.install-zmq }}-${{ matrix.install-mpi }}-${{ matrix.with-coverage }}-${{ matrix.with-asan }}-${{ matrix.with-elf }}-${{ matrix.with-valgrind }} | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: build/coverage/coverage.info | |
| # directory: build/Testing/CoverageInfo | |
| functionalities: gcov |