Updated github workflow packages to latest (#496)

askap-vast · Sep 24, 2023 · f84b1e6 · f84b1e6
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commit f84b1e6
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diff --git a/.github/workflows/ci-docs.yml b/.github/workflows/ci-docs.yml
@@ -1,23 +1,25 @@
 name: ci docs
+
 on:
-  push:
-    branches:
-      - master
-      - main
+ push:
+   branches:
+     - master
+     - main
+
 jobs:
   deploy:
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-20.04
     if: ${{ github.repository_owner == 'askap-vast' }}
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
-      - uses: actions/setup-python@v2
+      - uses: actions/setup-python@v4
         with:
-          python-version: 3.x
-      - uses: Gr1N/setup-poetry@v7
+          python-version: 3.9
+      - uses: Gr1N/setup-poetry@v8
       - name: Cache Python dependencies
-        uses: actions/cache@v2
+        uses: actions/cache@v3
         with:
           path: ~/.cache/pypoetry/virtualenvs
           key: ${{ runner.os }}-poetry-${{ hashFiles('poetry.lock') }}

diff --git a/.github/workflows/lint.yml b/.github/workflows/lint.yml
@@ -7,22 +7,22 @@ jobs:
     runs-on: ubuntu-20.04
 
     steps:
-    - uses: actions/checkout@v2
-    - uses: ricardochaves/[email protected]
-      with:
-        use-pylint: false
-        use-pycodestyle: false
-        use-flake8: true
-        use-black: false
-        use-mypy: false
-        use-isort: false
-        extra-pylint-options: ""
-        extra-pycodestyle-options: ""
-        extra-flake8-options: "--select=W291,W292,F401"
-        # flake8 options being used:
-        #   - W291 trailing whitespace
-        #   - W292 no newline at end of file
-        #   - F401 module imported but unused
-        extra-black-options: ""
-        extra-mypy-options: ""
-        extra-isort-options: ""
+        - uses: actions/checkout@v4
+        - uses: ricardochaves/[email protected]
+          with:
+            use-pylint: false
+            use-pycodestyle: false
+            use-flake8: true
+            use-black: false
+            use-mypy: false
+            use-isort: false
+            extra-pylint-options: ""
+            extra-pycodestyle-options: ""
+            extra-flake8-options: "--select=W291,W292,F401"
+            # flake8 options being used:
+            #   - W291 trailing whitespace
+            #   - W292 no newline at end of file
+            #   - F401 module imported but unused
+            extra-black-options: ""
+            extra-mypy-options: ""
+            extra-isort-options: ""
diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml
@@ -11,20 +11,20 @@ jobs:
         python_version: ['3.8', '3.9']
 
     steps:
-    - uses: actions/checkout@v2
+        - uses: actions/checkout@v4
 
-    - uses: actions/setup-python@v2
-      with:
-        python-version: ${{ matrix.python_version }}
-    - uses: Gr1N/setup-poetry@v8
-    - name: Cache Python dependencies
-      uses: actions/cache@v2
-      with:
-        path: ~/.cache/pypoetry/virtualenvs
-        key: ${{ runner.os }}-poetry-${{ hashFiles('poetry.lock') }}
+        - uses: actions/setup-python@v4
+          with:
+            python-version: ${{ matrix.python_version }}
+        - uses: Gr1N/setup-poetry@v8
+        - name: Cache Python dependencies
+          uses: actions/cache@v3
+          with:
+            path: ~/.cache/pypoetry/virtualenvs
+            key: ${{ runner.os }}-poetry-${{ hashFiles('poetry.lock') }}
 
-    - name: Install python dependencies
-      run: poetry install
-    - name: Run pytests
-      run: |
-        poetry run pytest --cov=vasttools -vv
+        - name: Install python dependencies
+          run: poetry install
+        - name: Run pytests
+          run: |
+            poetry run pytest --cov=vasttools -vv
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -10,13 +10,20 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 
 #### Changed
 
+- Bumped `mkdocstrings` to version `0.17.0` to avoid `mkdocstrings` error [#496](https://github.com/askap-vast/vast-tools/pull/496).
+- Pinned `jinja2` to version `3.0.3` to avoid `mkdocs_autoref` error [#496](https://github.com/askap-vast/vast-tools/pull/496).
+- Update github workflows to latest versions [#496](https://github.com/askap-vast/vast-tools/pull/496)
 - Exit nicely when invalid survey is requested for SkyView contour plot [#497](https://github.com/askap-vast/vast-tools/pull/497)
+
 #### Fixed
 
+- Fixed docs build process [#496](https://github.com/askap-vast/vast-tools/pull/496).
+
 #### Removed
 
 #### List of PRs
 
+- [#496](https://github.com/askap-vast/vast-tools/pull/496): fix: Update github workflows to latest versions
 - [#497](https://github.com/askap-vast/vast-tools/pull/497): feat: Exit nicely when invalid survey is requested for SkyView contour plot
 
 ## [3.0.0](https://github.com/askap-vast/vast-tools/releases/v3.0.0) (2023-09-02)
@@ -125,14 +132,14 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 #### List of PRs
 
 - [#490](https://github.com/askap-vast/vast-tools/pull/490): feat: Raise exception when simbad name query returns more names than there are objects queried
-- [#478](https://github.com/askap-vast/vast-tools/pull/478): fix: Account for pipeline runs with no measurement pairs file 
+- [#478](https://github.com/askap-vast/vast-tools/pull/478): fix: Account for pipeline runs with no measurement pairs file
 - [#483](https://github.com/askap-vast/vast-tools/pull/483): fix: Ensure that full image data does not persist when creating FITS cutouts from compressed HDUs
 - [#480](https://github.com/askap-vast/vast-tools/pull/480): feat: Added open_fits function to handle compressed image HDUs
-- [#476](https://github.com/askap-vast/vast-tools/pull/476): fix: Fixed missing RMS measurements for non-detections 
+- [#476](https://github.com/askap-vast/vast-tools/pull/476): fix: Fixed missing RMS measurements for non-detections
 - [#472](https://github.com/askap-vast/vast-tools/pull/472): fix: Remove duplicates in field matching
 - [#470](https://github.com/askap-vast/vast-tools/pull/470): feat: Added epoch 41
 - [#465](https://github.com/askap-vast/vast-tools/pull/465): feat: Added warning when querying corrected data
-- [#466](https://github.com/askap-vast/vast-tools/pull/466): feat: Added epochs 38, 39 and 40 
+- [#466](https://github.com/askap-vast/vast-tools/pull/466): feat: Added epochs 38, 39 and 40
 - [#463](https://github.com/askap-vast/vast-tools/pull/463): fix: Fix read_selavy to force all flux & flux_err values to be positive
 - [#458](https://github.com/askap-vast/vast-tools/pull/458): feat: Added epoch 37
 - [#453](https://github.com/askap-vast/vast-tools/pull/453): fix: Fix planet matching to correctly handle field names with/without 'A' suffix, and correctly handle empty df in init_sources
@@ -151,7 +158,7 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 - [#421](https://github.com/askap-vast/vast-tools/pull/421): feat, fix, docs: Updated Query._get_epochs to exit nicely when no epochs available & to allow lists and ints to be passed.
 - [#429](https://github.com/askap-vast/vast-tools/pull/429): feat: Added access to epoch 32
 - [#427](https://github.com/askap-vast/vast-tools/pull/427): feat: Added access to epoch 31
-- [#425](https://github.com/askap-vast/vast-tools/pull/425): fix: Bumped pytest and lint github workflow from ubuntu-18.04 -> ubuntu-20.04 
+- [#425](https://github.com/askap-vast/vast-tools/pull/425): fix: Bumped pytest and lint github workflow from ubuntu-18.04 -> ubuntu-20.04
 - [#419](https://github.com/askap-vast/vast-tools/pull/419): feat: Added access to epoch 30
 - [#416](https://github.com/askap-vast/vast-tools/pull/416): fix: Update match_planet_to_field to handle empty groups
 - [#414](https://github.com/askap-vast/vast-tools/pull/414): feat: Added access to epoch 27
@@ -253,7 +260,7 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 - [#258](https://github.com/askap-vast/vast-tools/pull/258): feat: v2.0.0-rc.6
 - [#257](https://github.com/askap-vast/vast-tools/pull/257): fix: Fix lightcurve axist limits for forced fits
 - [#255](https://github.com/askap-vast/vast-tools/pull/255): fix: Added if statement to catch os.getenv returning None
-- [#253](https://github.com/askap-vast/vast-tools/pull/253): feat: Added filter pipeline run by MOC function 
+- [#253](https://github.com/askap-vast/vast-tools/pull/253): feat: Added filter pipeline run by MOC function
 - [#251](https://github.com/askap-vast/vast-tools/pull/251): fix: Check self.pipeline inside write_measurements
 - [#247](https://github.com/askap-vast/vast-tools/pull/247): feat, dep: Updated forced photometry to be a dependency
 - [#246](https://github.com/askap-vast/vast-tools/pull/246): fix: Fixed vaex two epoch metric analysis
@@ -277,5 +284,4 @@ The release candidate 5 of v2.0.0. This was the release before the changelog was
 
 - [#221](https://github.com/askap-vast/vast-tools/pull/221) feat: Pipeline add 2 epoch Mooley style plotting
 - [#220](https://github.com/askap-vast/vast-tools/pull/220) fix: Issue 219 fix source names
-- [#218](https://github.com/askap-vast/vast-tools/pull/218) fix: Removed bad fields from epoch 12 csv 
-
+- [#218](https://github.com/askap-vast/vast-tools/pull/218) fix: Removed bad fields from epoch 12 csv
diff --git a/poetry.lock b/poetry.lock
diff --git a/pyproject.toml b/pyproject.toml
@@ -39,7 +39,7 @@ jupyterlab = "^3.1.0"
 jupyterlab-execute-time = "^2.0.2"
 jupyterlab-system-monitor = "^0.8.0"
 mkdocs-material = "^7.3.0"
-mkdocstrings = "^0.16.0"
+mkdocstrings = "^0.17.0"
 mkdocs-minify-plugin = "^0.4.1"
 mkdocs-material-extensions = "^1.0.3"
 mkdocs-gen-files = "^0.3.3"
@@ -52,6 +52,7 @@ pytest-mock = "^3.6.1"
 autopep8 = "^1.5.7"
 pytest-cov = "^2.12.1"
 flake8 = "^4.0.1"
+jinja2 = "3.0.3"
 
 [tool.poetry.scripts]
 build_lightcurves = "vasttools.bin.build_lightcurves:main"