ESM_BindAlign

Usage

Generate embeddings:

CUDA_VISIBLE_DEVICES=0,1 python -m protein_search.distributed_inference --config smiles_embedding.yaml
CUDA_VISIBLE_DEVICES=0,1 python -m protein_search.distributed_inference --config protein_embedding.yaml

Name		Name	Last commit message	Last commit date
Latest commit History 64 Commits
Images		Images
OLD		OLD
dataset		dataset
metric_learning3		metric_learning3
yaml_files		yaml_files
Plot_embeddings.py		Plot_embeddings.py
Plot_joint_embeddings.py		Plot_joint_embeddings.py
README.md		README.md
config.json		config.json
environment.yml		environment.yml
mol_proj_test.pt		mol_proj_test.pt
project_layer_lightning_json.py		project_layer_lightning_json.py
project_layer_lightning_triplet.py		project_layer_lightning_triplet.py
prot_proj_test.pt		prot_proj_test.pt

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ESM_BindAlign

Usage

Generate embeddings:

Perform metric learning to project both protein and smiles embeddings to same space:

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architvasan/ESM_BindAlign

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ESM_BindAlign

Usage

Generate embeddings:

Perform metric learning to project both protein and smiles embeddings to same space:

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