[Fix Python Bigtable dataloss bug] Stop unsetting timestamps of -1 #23843
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| # Licensed to the Apache Software Foundation (ASF) under one | |
| # or more contributor license agreements. See the NOTICE file | |
| # distributed with this work for additional information | |
| # regarding copyright ownership. The ASF licenses this file | |
| # to you under the Apache License, Version 2.0 (the | |
| # "License"); you may not use this file except in compliance | |
| # with the License. You may obtain a copy of the License at | |
| # | |
| # http://www.apache.org/licenses/LICENSE-2.0 | |
| # | |
| # Unless required by applicable law or agreed to in writing, | |
| # software distributed under the License is distributed on an | |
| # "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY | |
| # KIND, either express or implied. See the License for the | |
| # specific language governing permissions and limitations | |
| # under the License. | |
| # To learn more about GitHub Actions in Apache Beam check the CI.md | |
| name: Build python source distribution and wheels | |
| on: | |
| schedule: | |
| - cron: '10 2 * * *' | |
| push: | |
| branches: ['master', 'release-*'] | |
| tags: 'v*' | |
| pull_request: | |
| branches: ['master', 'release-*'] | |
| tags: 'v*' | |
| paths: ['sdks/python/**', 'model/**', 'release/**'] | |
| workflow_dispatch: | |
| # This allows a subsequently queued workflow run to interrupt previous runs | |
| concurrency: | |
| group: '${{ github.workflow }} @ ${{ github.event.issue.number || github.event.pull_request.head.label || github.sha || github.head_ref || github.ref }}-${{ github.event.schedule || github.event.comment.body || github.event.sender.login}}' | |
| cancel-in-progress: true | |
| env: | |
| GCP_PATH: "gs://${{ secrets.GCP_PYTHON_WHEELS_BUCKET }}/${GITHUB_REF##*/}/${GITHUB_SHA}-${GITHUB_RUN_ID}/" | |
| jobs: | |
| check_env_variables: | |
| timeout-minutes: 5 | |
| name: "Check environment variables" | |
| runs-on: ubuntu-latest | |
| env: | |
| EVENT_NAME: ${{ github.event_name }} | |
| PY_VERSIONS_FULL: "cp38-* cp39-* cp310-* cp311-*" | |
| outputs: | |
| gcp-variables-set: ${{ steps.check_gcp_variables.outputs.gcp-variables-set }} | |
| py-versions-full: ${{ steps.set-py-versions.outputs.py-versions-full }} | |
| py-versions-test: ${{ steps.set-py-versions.outputs.py-versions-test }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: "Check are GCP variables set" | |
| run: "./scripts/ci/ci_check_are_gcp_variables_set.sh" | |
| id: check_gcp_variables | |
| env: | |
| GCP_SA_EMAIL: ${{ secrets.GCP_SA_EMAIL }} | |
| GCP_SA_KEY: ${{ secrets.GCP_SA_KEY }} | |
| GCP_PYTHON_WHEELS_BUCKET: ${{ secrets.GCP_PYTHON_WHEELS_BUCKET }} | |
| GCP_PROJECT_ID: "not-needed-here" | |
| GCP_REGION: "not-needed-here" | |
| GCP_TESTING_BUCKET: "not-needed-here" | |
| - name: Set Python Versions for different environments | |
| id: set-py-versions | |
| run: | | |
| set -xeu | |
| if [ $EVENT_NAME == "pull_request" ]; then | |
| # run highest supported version on pull request. | |
| echo "py-versions-test=${PY_VERSIONS_FULL##* }" >> $GITHUB_OUTPUT | |
| else | |
| # run full version for push and cron jobs. | |
| echo "py-versions-test=$PY_VERSIONS_FULL" >> $GITHUB_OUTPUT | |
| fi | |
| # Output full set of versions so that we can test all languages on pull requests for certain platforms. | |
| echo "py-versions-full=$PY_VERSIONS_FULL" >> $GITHUB_OUTPUT | |
| build_source: | |
| runs-on: ubuntu-latest | |
| name: Build python source distribution | |
| outputs: | |
| is_rc: ${{ steps.is_rc.outputs.is_rc }} | |
| rc_num: ${{ steps.get_rc_version.outputs.RC_NUM }} | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Install python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.8 | |
| - name: Get build dependencies | |
| working-directory: ./sdks/python | |
| run: python -m pip install -r build-requirements.txt | |
| - name: Install wheels | |
| run: python -m pip install wheel | |
| - name: Get tag | |
| id: get_tag | |
| run: | | |
| echo "TAG=${GITHUB_REF#refs/*/}" >> $GITHUB_OUTPUT | |
| - name: Check whether an -RC tag was applied to the commit. | |
| id: is_rc | |
| run: | | |
| echo ${{ steps.get_tag.outputs.TAG }} > temp | |
| OUTPUT=$( if grep -e '-RC.' -q temp; then echo 1; else echo 0; fi) | |
| echo "is_rc=$OUTPUT" >> $GITHUB_OUTPUT | |
| - name: Get RELEASE_VERSION and RC_NUM | |
| if: steps.is_rc.outputs.is_rc == 1 | |
| id: get_rc_version | |
| run: | | |
| RC_NUM=$(sed -n "s/^.*-RC\([0-9]*\)/\1/p" temp) | |
| RELEASE_VERSION=$(sed -n "s/^v\(.*\)-RC[0-9]/\1/p" temp) | |
| echo "RC_NUM=$RC_NUM" >> $GITHUB_OUTPUT | |
| echo "RELEASE_VERSION=$RELEASE_VERSION" >> $GITHUB_OUTPUT | |
| - name: Build source | |
| working-directory: ./sdks/python | |
| run: python setup.py sdist --formats=zip | |
| - name: Add checksums | |
| working-directory: ./sdks/python/dist | |
| run: | | |
| file=$(ls | grep .zip | head -n 1) | |
| sha512sum $file > ${file}.sha512 | |
| - name: Unzip source | |
| working-directory: ./sdks/python | |
| run: unzip dist/$(ls dist | grep .zip | head -n 1) | |
| - name: Rename source directory | |
| working-directory: ./sdks/python | |
| run: mv $(ls | grep apache-beam) apache-beam-source | |
| - name: Upload source as artifact | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: source | |
| path: sdks/python/apache-beam-source | |
| - name: Upload compressed sources as artifacts | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: source_zip | |
| path: sdks/python/dist | |
| - name: Clear dist | |
| if: steps.is_rc.outputs.is_rc == 1 | |
| working-directory: ./sdks/python | |
| run: | | |
| rm -r ./dist | |
| rm -rd apache-beam-source | |
| - name: Rewrite SDK version to include RC number | |
| if: steps.is_rc.outputs.is_rc == 1 | |
| working-directory: ./sdks/python | |
| run: | | |
| RELEASE_VERSION=${{ steps.get_rc_version.outputs.RELEASE_VERSION }} | |
| RC_NUM=${{ steps.get_rc_version.outputs.RC_NUM }} | |
| sed -i -e "s/${RELEASE_VERSION}/${RELEASE_VERSION}rc${RC_NUM}/g" apache_beam/version.py | |
| - name: Build RC source | |
| if: steps.is_rc.outputs.is_rc == 1 | |
| working-directory: ./sdks/python | |
| run: python setup.py sdist --formats=zip | |
| - name: Add RC checksums | |
| if: steps.is_rc.outputs.is_rc == 1 | |
| working-directory: ./sdks/python/dist | |
| run: | | |
| file=$(ls | grep .zip | head -n 1) | |
| sha512sum $file > ${file}.sha512 | |
| - name: Unzip RC source | |
| if: steps.is_rc.outputs.is_rc == 1 | |
| working-directory: ./sdks/python | |
| run: unzip dist/$(ls dist | grep .zip | head -n 1) | |
| - name: Rename RC source directory | |
| if: steps.is_rc.outputs.is_rc == 1 | |
| working-directory: ./sdks/python | |
| run: mv $(ls | grep apache-beam) apache-beam-source-rc | |
| - name: Upload RC source as artifact | |
| if: steps.is_rc.outputs.is_rc == 1 | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: source_rc${{ steps.get_rc_version.outputs.RC_NUM }} | |
| path: sdks/python/apache-beam-source-rc | |
| - name: Upload compressed RC sources as artifacts | |
| if: steps.is_rc.outputs.is_rc == 1 | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: source_zip_rc${{ steps.get_rc_version.outputs.RC_NUM }} | |
| path: sdks/python/dist | |
| prepare_gcs: | |
| name: Prepare GCS | |
| needs: | |
| - build_source | |
| - check_env_variables | |
| runs-on: ubuntu-latest | |
| if: needs.check_env_variables.outputs.gcp-variables-set == 'true' && github.event_name != 'pull_request' | |
| steps: | |
| - name: Authenticate on GCP | |
| uses: google-github-actions/setup-gcloud@v0 | |
| with: | |
| service_account_email: ${{ secrets.GCP_SA_EMAIL }} | |
| service_account_key: ${{ secrets.GCP_SA_KEY }} | |
| - name: Remove existing files on GCS bucket | |
| run: gsutil rm -r ${{ env.GCP_PATH }} || true | |
| upload_source_to_gcs: | |
| name: Upload python source distribution to GCS bucket | |
| needs: | |
| - prepare_gcs | |
| - check_env_variables | |
| runs-on: ubuntu-latest | |
| if: needs.check_env_variables.outputs.gcp-variables-set == 'true' | |
| steps: | |
| - name: Download compressed sources from artifacts | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: source_zip | |
| path: source/ | |
| - name: Authenticate on GCP | |
| uses: google-github-actions/setup-gcloud@v0 | |
| with: | |
| service_account_email: ${{ secrets.GCP_SA_EMAIL }} | |
| service_account_key: ${{ secrets.GCP_SA_KEY }} | |
| - name: Copy sources to GCS bucket | |
| run: gsutil cp -r -a public-read source/* ${{ env.GCP_PATH }} | |
| build_wheels: | |
| name: Build python wheels on ${{matrix.arch}} for ${{ matrix.os_python.os }} | |
| needs: | |
| - check_env_variables | |
| - build_source | |
| env: | |
| CIBW_ARCHS_LINUX: ${{matrix.arch}} | |
| runs-on: ${{ matrix.os_python.os }} | |
| strategy: | |
| matrix: | |
| os_python: [ | |
| {"os": "ubuntu-latest", "python": "${{ needs.check_env_variables.outputs.py-versions-full }}" }, | |
| {"os": "macos-latest", "python": "${{ needs.check_env_variables.outputs.py-versions-test }}" }, | |
| {"os": "windows-latest", "python": "${{ needs.check_env_variables.outputs.py-versions-test }}" }, | |
| ] | |
| arch: [auto] | |
| include: | |
| - os_python: {"os": "ubuntu-latest", "python": "${{ needs.check_env_variables.outputs.py-versions-test }}" } | |
| arch: aarch64 | |
| steps: | |
| - name: Download python source distribution from artifacts | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: source | |
| path: apache-beam-source | |
| - name: Download Python SDK RC source distribution from artifacts | |
| if: ${{ needs.build_source.outputs.is_rc == 1 }} | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: source_rc${{ needs.build_source.outputs.rc_num }} | |
| path: apache-beam-source-rc | |
| - name: Install Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.8 | |
| - uses: docker/setup-qemu-action@v1 | |
| if: ${{matrix.arch == 'aarch64'}} | |
| name: Set up QEMU | |
| - name: Install cibuildwheel | |
| # note: sync cibuildwheel version with gradle task sdks:python:bdistPy* steps | |
| run: pip install cibuildwheel==2.9.0 | |
| - name: Build wheel | |
| working-directory: apache-beam-source | |
| env: | |
| CIBW_BUILD: ${{ matrix.os_python.python }} | |
| # TODO: https://github.com/apache/beam/issues/23048 | |
| CIBW_SKIP: "*-musllinux_*" | |
| CIBW_ENVIRONMENT: "SETUPTOOLS_USE_DISTUTILS=stdlib" | |
| CIBW_BEFORE_BUILD: pip install cython==0.29.36 numpy --config-settings=setup-args="-Dallow-noblas=true" && pip install --upgrade setuptools | |
| run: cibuildwheel --print-build-identifiers && cibuildwheel --output-dir wheelhouse | |
| shell: bash | |
| - name: install sha512sum on MacOS | |
| if: startsWith(matrix.os_python.os, 'macos') | |
| run: brew install coreutils | |
| - name: Add checksums | |
| working-directory: apache-beam-source/wheelhouse/ | |
| run: | | |
| for file in *.whl; do | |
| sha512sum $file > ${file}.sha512 | |
| done | |
| shell: bash | |
| - name: Upload wheels as artifacts | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: wheelhouse-${{ matrix.os_python.os }} | |
| path: apache-beam-source/wheelhouse/ | |
| - name: Build RC wheels | |
| if: ${{ needs.build_source.outputs.is_rc == 1 }} | |
| working-directory: apache-beam-source-rc | |
| env: | |
| CIBW_BUILD: ${{ matrix.os_python.python }} | |
| # TODO: https://github.com/apache/beam/issues/23048 | |
| CIBW_SKIP: "*-musllinux_*" | |
| CIBW_ENVIRONMENT: "SETUPTOOLS_USE_DISTUTILS=stdlib" | |
| CIBW_BEFORE_BUILD: pip install cython==0.29.36 numpy --config-settings=setup-args="-Dallow-noblas=true" && pip install --upgrade setuptools | |
| run: cibuildwheel --print-build-identifiers && cibuildwheel --output-dir wheelhouse | |
| shell: bash | |
| - name: Add RC checksums | |
| if: ${{ needs.build_source.outputs.is_rc == 1 }} | |
| working-directory: apache-beam-source-rc/wheelhouse/ | |
| run: | | |
| for file in *.whl; do | |
| sha512sum $file > ${file}.sha512 | |
| done | |
| shell: bash | |
| - name: Upload RC wheels as artifacts | |
| if: ${{ needs.build_source.outputs.is_rc == 1 }} | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: wheelhouse-rc${{ needs.build_source.outputs.rc_num }}-${{ matrix.os_python.os }} | |
| path: apache-beam-source-rc/wheelhouse/ | |
| upload_wheels_to_gcs: | |
| name: Upload wheels to GCS bucket | |
| needs: | |
| - build_wheels | |
| - check_env_variables | |
| runs-on: ubuntu-latest | |
| if: needs.check_env_variables.outputs.gcp-variables-set == 'true' && github.event_name != 'pull_request' | |
| strategy: | |
| matrix: | |
| os : [ubuntu-latest, macos-latest, windows-latest] | |
| steps: | |
| - name: Download wheels from artifacts | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: wheelhouse-${{ matrix.os }} | |
| path: wheelhouse/ | |
| - name: Authenticate on GCP | |
| uses: google-github-actions/setup-gcloud@v0 | |
| with: | |
| service_account_email: ${{ secrets.GCP_SA_EMAIL }} | |
| service_account_key: ${{ secrets.GCP_SA_KEY }} | |
| - name: Copy wheels to GCS bucket | |
| run: gsutil cp -r -a public-read wheelhouse/* ${{ env.GCP_PATH }} | |
| - name: Create github action information file on GCS bucket | |
| run: | | |
| cat > github_action_info <<EOF | |
| GITHUB_WORKFLOW=$GITHUB_WORKFLOW | |
| GITHUB_RUN_ID=$GITHUB_RUN_ID | |
| GITHUB_RUN_NUMBER=$GITHUB_RUN_NUMBER | |
| GITHUB_ACTION=$GITHUB_ACTION | |
| GITHUB_ACTOR=$GITHUB_ACTOR | |
| GITHUB_REPOSITORY=$GITHUB_REPOSITORY | |
| GITHUB_EVENT_NAME=$GITHUB_EVENT_NAME | |
| GITHUB_SHA=$GITHUB_SHA | |
| GITHUB_REF=$GITHUB_REF | |
| # only for forked repositiories | |
| GITHUB_HEAD_REF=$GITHUB_HEAD_REF | |
| GITHUB_BASE_REF=$GITHUB_BASE_REF | |
| EOF | |
| echo $(cat github_action_info) | |
| gsutil cp -a public-read github_action_info ${{ env.GCP_PATH }} | |
| - name: Upload GitHub event file to GCS bucket | |
| run: gsutil cp -a public-read ${GITHUB_EVENT_PATH} ${{ env.GCP_PATH }} | |
| list_files_on_gcs: | |
| name: List files on Google Cloud Storage Bucket | |
| needs: | |
| - upload_wheels_to_gcs | |
| - check_env_variables | |
| runs-on: ubuntu-latest | |
| if: needs.check_env_variables.outputs.gcp-variables-set == 'true' && github.event_name != 'pull_request' | |
| steps: | |
| - name: Authenticate on GCP | |
| uses: google-github-actions/setup-gcloud@v0 | |
| with: | |
| service_account_email: ${{ secrets.GCP_SA_EMAIL }} | |
| service_account_key: ${{ secrets.GCP_SA_KEY }} | |
| - name: List file on Google Cloud Storage Bucket | |
| run: gsutil ls "${{ env.GCP_PATH }}*" | |
| branch_repo_nightly: | |
| permissions: | |
| contents: write | |
| name: Branch repo nightly | |
| needs: | |
| - build_source | |
| - build_wheels | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 60 | |
| if: github.repository_owner == 'apache' && github.event_name == 'schedule' | |
| steps: | |
| - name: Checkout code on master branch | |
| uses: actions/checkout@v4 | |
| with: | |
| persist-credentials: false | |
| submodules: recursive | |
| - name: Branch commit | |
| run: | | |
| BRANCH_NAME=${GITHUB_REF##*/} | |
| echo "Updating nightly-${BRANCH_NAME}" | |
| git branch -f nightly-${BRANCH_NAME} HEAD | |
| - name: Push branch | |
| uses: ./.github/actions/github-push-action | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| force: true | |
| branch: nightly-${{ github.ref }} |