Releases: angelolab/mibi-bin-tools
v0.2.13
You may download the latest release with:
git clone -b v0.2.13 https://github.com/angelolab/mibi-bin-tools.gitWhat's new?
Spectral extraction
This is a feature that @jranek experimented with to visualize the intensities across various spectral ranges on a pixel-by-pixel basis. Now that various different slides are being experimented with on the MIBI, it's proven especially useful when determining contaminants that have not previously needed to be included in the gold slide-based compensation matrix.
For each pixel, the intensities across each spectra observed in the range is returned in an X by Y by S array (S = spectra range). They can then be visualized across the entire image or certain subsections of the image (including individual pixels).
Specific visualization support will be added in a later release.
Licensing
An MIT license has been added for this repo. This officially makes it open source and free to use.
🚀 Features
📚️ Documentation
Contributors
Assets 2
v0.2.12
v0.2.11
This releases optimizes the computation of the median pulse heights across all masses at once (previously, it was a one-per-mass process). Additionally, fixes a bug in the time-of-flight range thresholding (see #62).
🚀 Features
- Parallelize histogram and MPH calculations @alex-l-kong (#63)
📚️ Documentation
- Readme Adjustments, and Conda Environment file @srivarra (#60)
@alex-l-kong and @srivarra
Contributors
Assets 2
v0.2.10
- Truncate the mass range to time-of-flight conversion to ensure consistent range extraction @alex-l-kong (#56)
@alex-l-kong