Deprecated

This repository is no longer actively maintained. For updated MIBI preprocessing, please see our toffy repository

Overview

AMP, the Augmentable Mibi Pipeline, is a GUI environment for dynamically processing multiplexed image data via a configurable plugin-style architecture. With no plugins active, AMP acts as a simple image viewer. For now, AMP's standard plugins will be direct clones of those in MAUI.

This project is under active development, so exact details of functionality are subject to change.

Features

• Easily view distinct channels of multiplexed image data
• Loadable plugin interface for highly configurable data processing
• Direct installation; doesn't require MATLAB, python, docker, etc.

Current plugins

• ✔️ MAUI style background removal

Planned plugins

• ❌ MAUI style KNN-denoising
• ❌ MAUI style aggregate removal

Getting Started

• Installation
• Main Viewer
• Plugin Loading

Support

License