chore: explicit sequential execution; extra args param for run/deploy commands

[aorumbayev]

Proposed Changes

• Adds ability to pass extra args to deploy/run commands (has to be separated via --) . This can be reused in templates to allow deploy/building individual contracts/projects by name as extra arg.
• Adds explicit flags (concurrent mode by default) on workspace commands where user can explicitly run it in sequential mode (without specifying order in toml file). Unblocks edge cases reported by @CiottiGiorgio where multiple commands can't be executed concurrently and user doesn't have a preference on which exact order of execution is it they just need it to run sequentially in any order.
• Updates docs with minor sections on new cli param
• Adding a few more comprehensive tests for binary execution mode (which implicitly verifies latest extra args behaviour)

TODO

• - Snapshot tests

[github-actions]

Coverage Report

File	Stmts	Miss	Cover	Missing
src/algokit
__init__.py	15	7	53%	6–13, 17–24, 32–34
__main__.py	4	4	0%	1–7
src/algokit/cli
__init__.py	47	3	94%	31–34
codespace.py	50	9	82%	28, 114, 137, 150–155
completions.py	108	9	92%	63–64, 83, 93–99
dispenser.py	121	1	99%	77
doctor.py	53	3	94%	146–148
explore.py	63	15	76%	35–40, 42–47, 85–92, 113
generate.py	70	3	96%	76–77, 155
goal.py	47	1	98%	79
init.py	311	24	92%	497–498, 503–504, 507, 528, 531–533, 544, 548, 606, 632, 661, 694, 703–705, 708–713, 726, 745, 757–758
localnet.py	152	32	79%	65, 86–113, 133–137, 170, 182, 197–207, 220, 271, 292–293
task.py	34	3	91%	25–28
src/algokit/cli/common
utils.py	37	2	95%	137, 139
src/algokit/cli/project
bootstrap.py	32	1	97%	33
deploy.py	117	20	83%	47, 49, 102, 125, 147–149, 270, 277, 291–299, 302–311
link.py	89	16	82%	60, 65–66, 101–105, 115–120, 148–149, 218–219, 223
list.py	33	5	85%	21–23, 51–56
run.py	46	2	96%	38, 174
src/algokit/cli/tasks
analyze.py	81	1	99%	81
assets.py	82	13	84%	65–66, 72, 74–75, 105, 119, 125–126, 132, 134, 136–137
ipfs.py	51	8	84%	52, 80, 92, 94–95, 105–107
mint.py	106	15	86%	51, 73, 100–103, 108, 113, 131–132, 158, 335–339
send_transaction.py	65	10	85%	52–53, 57, 89, 158, 170–174
sign_transaction.py	59	8	86%	21, 28–30, 71–72, 109, 123
transfer.py	39	3	92%	26, 90, 117
utils.py	114	46	60%	29–37, 43–46, 78–79, 103–104, 128–136, 155–165, 212, 261–262, 282–293, 300–302, 324
vanity_address.py	56	10	82%	41, 45–48, 112, 114, 121–123
wallet.py	79	4	95%	21, 66, 136, 162
src/algokit/core
codespace.py	175	68	61%	34–37, 41–44, 48–71, 111–112, 125–133, 191, 200–202, 210, 216–217, 229–236, 251–298, 311–313, 338–344, 348, 395
conf.py	57	9	84%	12, 24, 28, 36, 38, 73–75, 80
dispenser.py	202	26	87%	91, 123–124, 141–149, 191–192, 198–200, 218–219, 259–260, 318, 332–334, 345–346, 356, 369, 384
doctor.py	65	7	89%	67–69, 92–94, 134
generate.py	50	3	94%	44, 85, 103
goal.py	65	4	94%	21, 36–37, 47
init.py	67	10	85%	53, 57–62, 70, 81, 88, 108–109
log_handlers.py	68	7	90%	50–51, 63, 112–116, 125
proc.py	45	1	98%	99
sandbox.py	263	23	91%	32, 89–92, 97, 101–103, 153, 201–208, 219, 590, 606, 631, 639
typed_client_generation.py	170	20	88%	62–64, 103–108, 132, 135–138, 156, 159–162, 229, 232–235
utils.py	150	40	73%	50–51, 57–69, 125–131, 155, 158, 164–177, 206–208, 237–240, 262
src/algokit/core/compilers
python.py	28	5	82%	19–20, 25, 49–50
src/algokit/core/config_commands
container_engine.py	41	21	49%	24, 29–31, 47–76
version_prompt.py	92	14	85%	37–38, 68, 87–90, 108, 118–125, 148
src/algokit/core/project
__init__.py	53	3	94%	50, 86, 145
bootstrap.py	120	8	93%	47, 126–127, 149, 176, 207–209
deploy.py	69	9	87%	108–111, 120–122, 126, 131
run.py	132	13	90%	83, 88, 97–98, 133–134, 138–139, 143, 147, 277–278, 293
src/algokit/core/tasks
analyze.py	93	3	97%	105–112, 187
ipfs.py	63	7	89%	58–64, 140, 144, 146, 152
nfd.py	49	13	73%	25, 31, 34–41, 70–72, 99–101
vanity_address.py	90	34	62%	49–50, 54, 59–75, 92–108, 128–131
wallet.py	71	5	93%	37, 129, 155–157
src/algokit/core/tasks/mint
mint.py	74	9	88%	123–133
models.py	92	17	82%	50, 52, 57, 71–74, 81–90
TOTAL	4757	657	86%

Tests	Skipped	Failures	Errors	Time
499	0 💤	0 ❌	0 🔥	24.986s ⏱️